Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0063 ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCATCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAGCAGGCTCAAGATCAAGAACTTAAAGGTTCGGGGGTTAAGGCACCTGCTCCTGCTTCTTTCCTTGAAGTAGGAGATCCAAACCTTCAAATTCCACTTTTCTTATACTCTTTGCTCAGAAAGTGA 915 46.01 MSPINHHQHFSKSTSAAVTTTTSSTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDHHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGSGVKAPAPASFLEVGDPNLQIPLFLYSLLRK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1521117 1523593 - CaPI482276_09g000630.1 Cam09g0063 134392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0063 304 MobiDBLite consensus disorder prediction 1 21 - -
Cam09g0063 304 Pfam Lateral organ boundaries (LOB) domain 31 126 IPR004883 -
Cam09g0063 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 227 - -
Cam09g0063 304 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1055 Cam-Chr2:16698609 Cam09g0063 Cam-Chr9:1521117 2.60E-19 dispersed
Cam08g2176 Cam-Chr8:27151370 Cam09g0063 Cam-Chr9:1521117 1.90E-25 dispersed
Cam09g0063 Cam-Chr9:1521117 Cam09g1892 Cam-Chr9:33632897 4.70E-26 dispersed
Cam09g0063 Cam-Chr9:1521117 Cam06g1875 Cam-Chr6:29809294 1.10E-22 transposed
Cam09g0063 Cam-Chr9:1521117 Cam10g1288 Cam-Chr10:26329080 1.10E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52510 PF03195 LOB 1.10E-35 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0063 - - - 0.0