Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0065 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACAAATAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTCAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAATAACAGCAACAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAGTAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCGCCATCAACACCACCACCGCTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCATTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1581 44.15 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEVGLWSREVEMGRGGGGGGGGAVSCSSSSCTDYGNKAASASASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPAINTTTARSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLHSQIQKPWQG 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1533192 1536066 - CaPI482276_09g000650.1 Cam09g0065 134394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0065 526 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cam09g0065 526 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Cam09g0065 526 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cam09g0065 526 MobiDBLite consensus disorder prediction 46 72 - -
Cam09g0065 526 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cam09g0065 526 SMART c2h2final6 166 186 IPR013087 -
Cam09g0065 526 SMART c2h2final6 131 161 IPR013087 -
Cam09g0065 526 SMART c2h2final6 89 111 IPR013087 -
Cam09g0065 526 MobiDBLite consensus disorder prediction 50 64 - -
Cam09g0065 526 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cam09g0065 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cam09g0065 526 Gene3D Classic Zinc Finger 68 139 - -
Cam09g0065 526 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cam09g0065 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 493 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam09g0065 526 FunFam protein indeterminate-domain 12-like 68 137 - -
Cam09g0065 526 Gene3D Classic Zinc Finger 144 223 - -
Cam09g0065 526 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0835 Cam-Chr4:22587034 Cam09g0065 Cam-Chr9:1533192 3.00E-87 dispersed
Cam09g0065 Cam-Chr9:1533192 Cam10g2003 Cam-Chr10:33907426 2.20E-87 dispersed
Cam05g1960 Cam-Chr5:28475612 Cam09g0065 Cam-Chr9:1533192 2.70E-88 wgd
Cam07g1187 Cam-Chr7:26253782 Cam09g0065 Cam-Chr9:1533192 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52511 PF00096 zf-C2H2 0.0053 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0065 K25870 - csv:101220200 706.827