Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0075 ATGATGGAACAATTCTGGGAACCTCGATCTACGACGGTTCTGGATTCTCAATGTCCTTTGATTGTTTTTAGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAATTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGGTCTGCTTCATTCCTTTCTCTTTCGATTTTGCTTCCTTTTCTACTTATTTCACTGCACGGATATGGTTGTATGTATCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGTGTCCGTGAAGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGCGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGCCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 1593 43.57 MMEQFWEPRSTTVLDSQCPLIVFSHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQVCFIPFSFDFASFSTYFTARIWLYVSMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1589265 1594449 - CaPI482276_09g000750.1 Cam09g0075 134404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0075 530 FunFam Eukaryotic initiation factor 4A-II 145 364 - -
Cam09g0075 530 Pfam Helicase conserved C-terminal domain 383 491 IPR001650 -
Cam09g0075 530 Gene3D - 147 365 IPR027417 -
Cam09g0075 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 358 IPR014001 -
Cam09g0075 530 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 152 516 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cam09g0075 530 Pfam DEAD/DEAH box helicase 182 344 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam09g0075 530 Gene3D - 366 530 IPR027417 -
Cam09g0075 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 511 IPR027417 -
Cam09g0075 530 CDD DEADc_EIF4A 162 359 - -
Cam09g0075 530 SMART helicmild6 410 491 IPR001650 -
Cam09g0075 530 CDD SF2_C_DEAD 370 500 - -
Cam09g0075 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 530 IPR001650 -
Cam09g0075 530 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Cam09g0075 530 SMART ultradead3 176 373 IPR014001 -
Cam09g0075 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724(InterPro)
Cam09g0075 530 FunFam Eukaryotic initiation factor 4A-III 365 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1792 Cam-Chr8:24092942 Cam09g0075 Cam-Chr9:1589265 4.40E-62 dispersed
Cam09g0075 Cam-Chr9:1589265 Cam11g1693 Cam-Chr11:29599403 3.00E-52 dispersed
Cam01g0536 Cam-Chr1:5676824 Cam09g0075 Cam-Chr9:1589265 4.00E-39 transposed
Cam01g0828 Cam-Chr1:9346237 Cam09g0075 Cam-Chr9:1589265 6.10E-52 transposed
Cam02g1933 Cam-Chr2:32441153 Cam09g0075 Cam-Chr9:1589265 9.60E-54 transposed
Cam10g1488 Cam-Chr10:28597241 Cam09g0075 Cam-Chr9:1589265 1.20E-141 transposed
Cam10g1921 Cam-Chr10:33266696 Cam09g0075 Cam-Chr9:1589265 6.20E-55 transposed
Cam07g1175 Cam-Chr7:26127321 Cam09g0075 Cam-Chr9:1589265 6.70E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0075 K03257 - csv:101221456 816.224