Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0080 ATGGATAGGGTTTACACGTCACTCATAGGTTCGAACGACCCGCCGCCTAGCGCCCGAACAAAGAAGGAAACCCTAACAAAGCAAAGCCAGCCAAATTTCCTAATCCCATACCGCCACGTGTCAGTCATCTTTTTCCCTTTCTTTTATCTTTCCCTCACTCCTCTTTCCACACTCATCCGGTTTCCCTTCTGCTTCTCCGACCGCCATTGCCACCCAATCGGAGCCCTAAAATTCCTTCTTCCATTGGTTTCCCTCGAATTTTTCTCCGGTGAATGTTGTCGTTTCACCTGGAAATGGTGGAACAATACGTGCTTGGAGAAGGTGGCGAAGATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTGTTGAAAACTCGGCAACAGGTTGCTCATTCGCAACTTCCTTGCATCAGAACTGCATTTTCACTTGTCCGCCATGAAGGTTTTCGAGCTCTCTACCGAGGATTTGGTACTTCTCTAATGGGGACTATCCCGGCTAGAGCTCTATACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAAAGTGGGATTTCCAGAGACTACTGCAGCTACCATGGCTAACGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAAAGGCTCATGGTTCAACCTAGCTACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCATTTAGAAAGATCCTCAATGCCGATGGCCTCCGAGGCCTCTACCGAGGATTCGGGATATCGATTTTGACCTACGCACCGTCGAATGCTGTGTGGTGGGCTTCTTATTATGTAGCTCAGCGGCTAGTTTGGGGTGGAATTGGCTGCTGTTATTATGCAAAGAAGGTTGATGAAGGCAATGAAAATGGAGGTTGTAGTAATGTCTACAAACCGGATTCCAAGACTGTGATTGCGGTTCAGGGGGCGAGCGCAGCAATGGCCGGGAGTATATCGGCTTTGATAACAATGCCACTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAAAATGGGAGAAGAGGGCCAACTATAGGACAGACATTGAGGAATTTGGTAAGGGAAGGAGGGTGGACGGCATGTTACCGAGGCTTGGCACCGCGATGCGCATCAATGTCGATGTCTGCAACGACGATGATCACTACATATGAGTTTTTGAAACGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA 1377 47.49 MDRVYTSLIGSNDPPPSARTKKETLTKQSQPNFLIPYRHVSVIFFPFFYLSLTPLSTLIRFPFCFSDRHCHPIGALKFLLPLVSLEFFSGECCRFTWKWWNNTCLEKVAKMNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIKVGFPETTAATMANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPSYNNPNSSSTHYINGIDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCCYYAKKVDEGNENGGCSNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1669681 1671304 + CaPI482276_09g000800.1 Cam09g0080 134409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0080 458 Gene3D Mitochondrial carrier domain 140 457 IPR023395 -
Cam09g0080 458 SUPERFAMILY Mitochondrial carrier 133 445 IPR023395 -
Cam09g0080 458 MobiDBLite consensus disorder prediction 1 23 - -
Cam09g0080 458 ProSiteProfiles Solute carrier (Solcar) repeat profile. 359 448 IPR018108 -
Cam09g0080 458 Pfam Mitochondrial carrier protein 363 451 IPR018108 -
Cam09g0080 458 Pfam Mitochondrial carrier protein 146 220 IPR018108 -
Cam09g0080 458 Pfam Mitochondrial carrier protein 235 327 IPR018108 -
Cam09g0080 458 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 218 IPR018108 -
Cam09g0080 458 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 326 IPR018108 -
Cam09g0080 458 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 117 454 - -
Cam09g0080 458 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085(InterPro)
Cam09g0080 458 PRINTS Mitochondrial carrier protein signature 191 209 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0080 Cam-Chr9:1669681 Cam10g0164 Cam-Chr10:3252668 9.40E-10 dispersed
Cam05g0797 Cam-Chr5:7049466 Cam09g0080 Cam-Chr9:1669681 6.20E-64 transposed
Cam11g0513 Cam-Chr11:6559526 Cam09g0080 Cam-Chr9:1669681 2.60E-69 transposed
Cam05g1984 Cam-Chr5:28661642 Cam09g0080 Cam-Chr9:1669681 4.60E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0080 K15121 - csv:101210602 628.632