Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0081 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.99 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1672909 1675313 - CaPI482276_09g000810.1 Cam09g0081 134410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0081 251 SMART PHD_3 197 245 IPR001965 -
Cam09g0081 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cam09g0081 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cam09g0081 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cam09g0081 251 MobiDBLite consensus disorder prediction 147 174 - -
Cam09g0081 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cam09g0081 251 FunFam PHD finger alfin-like protein 190 246 - -
Cam09g0081 251 Pfam PHD-finger 198 244 IPR019787 -
Cam09g0081 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cam09g0081 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cam09g0081 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1443 Cam-Chr8:20765589 Cam09g0081 Cam-Chr9:1672909 2.70E-96 dispersed
Cam09g0081 Cam-Chr9:1672909 Cam10g0706 Cam-Chr10:11447040 1.20E-94 dispersed
Cam11g0168 Cam-Chr11:3264846 Cam09g0081 Cam-Chr9:1672909 3.30E-110 wgd
Cam03g1545 Cam-Chr3:30391170 Cam09g0081 Cam-Chr9:1672909 2.10E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52512 PF12165 Alfin 7.50E-68 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0081 K26274 - csv:101222322 501.901