Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0131 ATGTTCATCCTTCGACTGAGTGTCTTGGAGAATCTAAAGGGCAGTCGTCGAAATTCTTGGGCTCGTGGGTTAGACCGTACGATTGGTTTGTTCAAAAATTCTTTAGGAAAAGTAAAGAAATCGGTTACTTGTTTTAATCAACGTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGGACTACTTAGGGTTTTCGATTTTCCTGATTTTTTCCATCCGCTGCTCGATCTTCCTTCCTCCAGTCGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGTAGTGTTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTCTTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTGTCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAGGCACATTTTCTTGTTATGAAGCATGCCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCAAATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTTTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCGGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATTGAACCCCTTGAGAAAGAGGCAGCTGACGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTGTAGACAGAGGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAACCAAACGCTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGTCTGGGCATTGCCAGCATCCAGGGTTTTTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATCCAAGCCTTGGTTCTCATGATGTTATCGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGCGTGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCACGTTCCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACCGTAGGTTCAGCTTCAGTTTTTCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATTAATCCATTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGATGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAACCGACTTATTCCTCCAGGTGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTTTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCCGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCACACTTCGGCTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTGGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATATGA 2592 42.79 MFILRLSVLENLKGSRRNSWARGLDRTIGLFKNSLGKVKKSVTCFNQRKGVKDSPPWWTRMLIFKATDYLGFSIFLIFSIRCSIFLPPVVPARYTCRLLAIPCGSVPEDKCKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVLESYKPNIVYLQGEQLENDEVGSLVWGDVDLSTVEAISGLFSYPLSTTVYLEIAKGDEVADALHSKGIPYVIYWRGTFSCYEACHFRNAFLSVLQSSSAHTWDAFQLANASFRMYCLGNNLVFPNSSHEEVSEDRGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIVDRGELVQTLIDGEGTKRLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGFSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDPSLGSHDVIEHLKVSSGRRIDSVNMEIGSRNGFSTPTFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIETGGHNGSLVKASVPSSNPTKHVTVGSASVFQQKMFPSASQYKQIIPINPLPLKKHGCGRSPIQACFEDEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2129107 2135085 - CaPI482276_09g001310.1 Cam09g0131 134460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0131 863 SUPERFAMILY FYVE/PHD zinc finger 775 843 IPR011011 -
Cam09g0131 863 SMART ARID_2 676 779 - -
Cam09g0131 863 SMART bright_3 680 784 IPR001606 GO:0003677(InterPro)
Cam09g0131 863 Pfam ARID/BRIGHT DNA binding domain 683 779 IPR001606 GO:0003677(InterPro)
Cam09g0131 863 ProSiteProfiles ARID domain profile. 679 783 IPR001606 GO:0003677(InterPro)
Cam09g0131 863 CDD ARID 682 779 - -
Cam09g0131 863 CDD PHD_ARID4_like 789 840 - -
Cam09g0131 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 849 IPR013083 -
Cam09g0131 863 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 92 855 IPR042293 -
Cam09g0131 863 Gene3D - 676 779 IPR036431 GO:0003677(InterPro)
Cam09g0131 863 SUPERFAMILY ARID-like 682 794 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0131 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1127 Cam-Chr7:25758804 Cam09g0131 Cam-Chr9:2129107 2.60E-293 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g0806 . 64 415 ARID Transcription Factor Family AT1G04880 58.2 1.4e-106 383.6
Cam10g0009 . 289 559 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cam05g1700 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.3e-111 397.9
Cam10g0009 . 268 589 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cam07g1127 . 1 762 ARID Transcription Factor Family AT3G43240 59.3 8.9e-260 893.3
Cam09g0131 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.1e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52519 PF01388 ARID 3.40E-15 CL0123 Cam TR