Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0139 ATGAAAGAGACCGATATAATGGAAAAGCCCATCGCCGCCGGCCTCTCAAATTCCGGCAACCACCACCAAAAGCCCAAAAACAAATCAAAAAAGCTTCTAATTTTAGCCCTGTCTTCGACCCTGCTTCTGGTCGGCGCCGTCGTGGGGATCGTCGCCGGAGTGACGAAATCGGAAAACTCCGGGAAATCACACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTTTACCCGGATCTGTGCTTTTCTGCAATTTCGAATAGTGAAGGGGCTATGTTGAAAGTTAGTAATCAAAAGGATGTGATTGAGGTGTCAATTAATATAACGGTGAAAGCTGTGGAAGATAATTACTTTAGAGTGAAGAAATTGTGTGGGTTGAAGAATATTAGCCATAGAGAGAAAATTGCTCTTCATGATTGTCTTGAGACAATTGATGAGACGCTTGATGAACTTCATAAAGCTATTGTGGACCTTCATCAATACCCCAATAAAAAGTCTCTTAATCAACACGCTGATGATCTTAAAACCTTGCTTAGTTCCGCCATTACCAATCAGGAGACATGCCTCGACGGGTTTTCGCACGACGGGGCAGACAAAAACCTGAGGGATAAGCTAAAAGAGGGGCAAGAGGAAGTAGAACACATGTGCAGCAATGCATTAGCCATGATTAAGAACATGACAGATACAGACATAGCCAACTACGAGGCTAAAATGGGAACAACCAACAATAGAAAGCTCAAGGAAGAACAGAACAACGGCGACGGCATCCAGTGGCCGGAGTGGCTGTCGGCCGGAGACCGGCGGCTGCTTCAGTCGTCGTCCGTGGAGCCAGATGTAGTGGTGGCGGCGGACGGCAGTGGGAACTTCCGAACGGTGGCGGCCGCCGTGGCGGCGGCGCCGGAAAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAAAATGTGGAAGTGCCGAAGAAGAAAACGAATATTATGTTTATGGGAGATGGAAGACGTAACACTATAATTACCGGCAGCCGGAATGTGGTCGACGGCAGCACCACTTTTCACTCTGCAACCGTCGCTGCGGTGGGAGGAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCATTTTCCAAGACTGCGACATTCACGCGCGCAAACCAAACTCAGGTCAGAAAAACATGGTCACGGCCCAAGGACGGTCCGACCCGAACCAAAACACCGGAATCGTTATCCAGAAATGCCGGATCGGTGCCACGTCGGATCTCCGACCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCGAGAACGGTGATTATGCAGTCAACGATTAGTGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCACTTAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCAACCGGGGGGAGGGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACGGAGGCTGAAAGTTTTACCGCAGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGCTCTACTGGCTTTCCTTTCTCTCTAGGATTATGA 1767 49.75 MKETDIMEKPIAAGLSNSGNHHQKPKNKSKKLLILALSSTLLLVGAVVGIVAGVTKSENSGKSHAIVKSTCSSTLYPDLCFSAISNSEGAMLKVSNQKDVIEVSINITVKAVEDNYFRVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLHQYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDGADKNLRDKLKEGQEEVEHMCSNALAMIKNMTDTDIANYEAKMGTTNNRKLKEEQNNGDGIQWPEWLSAGDRRLLQSSSVEPDVVVAADGSGNFRTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRRNTIITGSRNVVDGSTTFHSATVAAVGGGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKCRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAESFTAGKFIGGGSWLRSTGFPFSLGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2188255 2193689 - CaPI482276_09g001390.1 Cam09g0139 134468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0139 588 Pfam Pectinesterase 277 573 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam09g0139 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 226 IPR035513 -
Cam09g0139 588 NCBIfam pectinesterase inhibitor domain 38 225 IPR006501 GO:0004857(InterPro)
Cam09g0139 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 226 IPR035513 -
Cam09g0139 588 SMART PMEI_2 62 221 IPR006501 GO:0004857(InterPro)
Cam09g0139 588 FunFam Pectinesterase 63 226 - -
Cam09g0139 588 PANTHER PECTINESTERASE 31 579 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam09g0139 588 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
Cam09g0139 588 Gene3D - 271 588 IPR012334 -
Cam09g0139 588 SUPERFAMILY Pectin lyase-like 274 587 IPR011050 -
Cam09g0139 588 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857(InterPro)
Cam09g0139 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Cam09g0139 588 MobiDBLite consensus disorder prediction 1 25 - -
Cam09g0139 588 CDD PMEI-like_3 69 226 - -
Cam09g0139 588 FunFam Pectinesterase 271 588 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1132 Cam-Chr7:25796540 Cam09g0139 Cam-Chr9:2188255 2.60E-219 dispersed
Cam09g0139 Cam-Chr9:2188255 Cam09g0554 Cam-Chr9:5538356 9.80E-137 dispersed
Cam01g2270 Cam-Chr1:35021190 Cam09g0139 Cam-Chr9:2188255 4.80E-125 transposed
Cam09g0859 Cam-Chr9:8866576 Cam09g0139 Cam-Chr9:2188255 2.80E-173 transposed
Cam07g1131 Cam-Chr7:25788586 Cam09g0139 Cam-Chr9:2188255 2.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0139 K01051 - csv:101212388 1031.17