Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0160 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCGCGCGGTATCCAATGGCTGA 981 45.67 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEKSLYLLSWPMHLGIKGTVRAVSNG 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2371740 2377233 + CaPI482276_09g001600.1 Cam09g0160 134489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0160 326 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0160 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Cam09g0160 326 PANTHER GATA TRANSCRIPTION FACTOR 28 29 294 IPR045280 GO:0006355(InterPro)
Cam09g0160 326 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0160 326 Gene3D - 221 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam09g0160 326 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0160 326 MobiDBLite consensus disorder prediction 274 301 - -
Cam09g0160 326 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0160 326 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0160 326 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cam09g0160 326 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Cam09g0160 326 SMART tify_2 78 113 IPR010399 -
Cam09g0160 326 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Cam09g0160 326 Pfam tify domain 84 112 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0160 Cam-Chr9:2371740 Cam09g1567 Cam-Chr9:26431473 1.10E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52520 PF06203 CCT 9.60E-15 CL0281 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0160 - - - 0.0