Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g0160 | ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAGAAATCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCGCGCGGTATCCAATGGCTGA | 981 | 45.67 | MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEKSLYLLSWPMHLGIKGTVRAVSNG | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2371740 | 2377233 | + | CaPI482276_09g001600.1 | Cam09g0160 | 134489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g0160 | 326 | Pfam | GATA zinc finger | 231 | 267 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g0160 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 289 | - | - | |
Cam09g0160 | 326 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 29 | 294 | IPR045280 | GO:0006355(InterPro) | |
Cam09g0160 | 326 | SMART | GATA_3 | 225 | 278 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g0160 | 326 | Gene3D | - | 221 | 289 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cam09g0160 | 326 | CDD | ZnF_GATA | 231 | 286 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g0160 | 326 | MobiDBLite | consensus disorder prediction | 274 | 301 | - | - | |
Cam09g0160 | 326 | ProSiteProfiles | GATA-type zinc finger domain profile. | 225 | 286 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g0160 | 326 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam09g0160 | 326 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Cam09g0160 | 326 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Cam09g0160 | 326 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Cam09g0160 | 326 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515(InterPro) | |
Cam09g0160 | 326 | Pfam | tify domain | 84 | 112 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g0160 | Cam-Chr9:2371740 | Cam09g1567 | Cam-Chr9:26431473 | 1.10E-55 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52520 | PF06203 | CCT | 9.60E-15 | CL0281 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g0160 | - | - | - | 0.0 |