Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0163 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTAGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTCCCGTCCGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGACGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTTCGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGTCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGACGAAACCCGGTAG 1872 45.09 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2395227 2400986 - CaPI482276_09g001630.1 Cam09g0163 134492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0163 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Cam09g0163 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Cam09g0163 623 Gene3D - 134 205 - -
Cam09g0163 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Cam09g0163 623 Gene3D - 20 89 IPR023366 -
Cam09g0163 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Cam09g0163 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cam09g0163 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 11 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(PANTHER)
Cam09g0163 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cam09g0163 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Cam09g0163 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cam09g0163 623 Gene3D - 459 615 IPR024034 -
Cam09g0163 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Cam09g0163 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Cam09g0163 623 CDD V_A-ATPase_A 88 460 - -
Cam09g0163 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Cam09g0163 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cam09g0163 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Cam09g0163 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Cam09g0163 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cam09g0163 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Cam09g0163 623 Gene3D - 91 457 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0163 K02145 - csv:101216234 1211.44