Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0177 ATGGCAAAACCAAAGAATTCAAATCCCCAACACAAAAGCAACCCTCTTCCAGTTACTCCGACCGGCAAAAAACCAAGAGACTGCAACAAACATCCGGTTTTCCGAGGCGTGCGGAAGAGAAGCTGGGGGAAATGGGTATCGGAAATCCGGCAACCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCGACGCCGGAGATGGCAGCGCGTGCACACGACGCAGCAGCCTTATGCATCAAAGGCGATTCTGCCATCCTCAATTACCCTGAACTTGCAGAGTTCTTGCCCCGCCCGGCGTCGCTCATGCCGCACGACGTTCAGGCTGCCGCCGCCAAAGCCGCGGCGATGGTCAATTTGAATTCCTCTGCATTGCCGTCGCCGTCGGAGGAGGAGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATAGAAGAAGATTTTGGTACTGTGTCGCTGAACGAGTTCGGATTGGTTACTGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCGTTGGCGGCGGAATTTGGTTGCGGTTATTTTTCCGACCAAACGGCGGCGGAGGAAAGTTCTTACCCGAGCAGCTTTTACGGTGTTCTTTGGGATTAA 612 54.08 MAKPKNSNPQHKSNPLPVTPTGKKPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELAEFLPRPASLMPHDVQAAAAKAAAMVNLNSSALPSPSEEEEELSEIVELPNIEEDFGTVSLNEFGLVTESWEWWESVAMPLAAEFGCGYFSDQTAAEESSYPSSFYGVLWD 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2557370 2557981 - CaPI482276_09g001770.1 Cam09g0177 134506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0177 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 MobiDBLite consensus disorder prediction 1 17 - -
Cam09g0177 203 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 MobiDBLite consensus disorder prediction 1 34 - -
Cam09g0177 203 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0177 203 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677(InterPro)
Cam09g0177 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 134 IPR051032 -
Cam09g0177 203 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cam09g0177 203 Pfam AP2 domain 32 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0042 Cam-Chr5:948858 Cam09g0177 Cam-Chr9:2557370 2.10E-34 dispersed
Cam07g1238 Cam-Chr7:26776299 Cam09g0177 Cam-Chr9:2557370 2.30E-48 dispersed
Cam08g0179 Cam-Chr8:3706552 Cam09g0177 Cam-Chr9:2557370 1.60E-22 dispersed
Cam08g1682 Cam-Chr8:23102991 Cam09g0177 Cam-Chr9:2557370 5.00E-41 dispersed
Cam09g0177 Cam-Chr9:2557370 Cam11g0326 Cam-Chr11:4794562 4.10E-34 dispersed
Cam09g0177 Cam-Chr9:2557370 Cam11g1537 Cam-Chr11:28196751 2.30E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52521 PF00847 AP2 5.50E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0177 K09286 - csv:101217361 331.643