Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0182 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTTGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCAGCAGCTCTAGATCCAGCAGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCCATCGGAGCTAACATCTCCGGTGGCCACGTCAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTTATTACCACCATTTTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTTGCGGTTCCGGTCCACAGCGTTGCCGCCGGCGTAGGAGCGGCGGAAGGGGTTGTGACGGAGATTGTAACCACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATCGCCATCGGTTTCATCGTGGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGGTCGATGAACCCGGCTCGATCTTTCGGCCCGGCGGTGGTCAGTGGCGACTTTCATGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAATGATTTCTAA 747 54.35 MAWFTIGSFQDSLSLRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2580487 2581725 - CaPI482276_09g001820.1 Cam09g0182 134511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0182 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cam09g0182 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 SUPERFAMILY Aquaporin-like 15 242 IPR023271 -
Cam09g0182 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cam09g0182 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam09g0182 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cam09g0182 248 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0423 Cam-Chr1:4653305 Cam09g0182 Cam-Chr9:2580487 6.50E-98 dispersed
Cam01g0504 Cam-Chr1:5337987 Cam09g0182 Cam-Chr9:2580487 1.30E-48 dispersed
Cam08g1685 Cam-Chr8:23122376 Cam09g0182 Cam-Chr9:2580487 2.20E-66 dispersed
Cam09g0182 Cam-Chr9:2580487 Cam10g1958 Cam-Chr10:33529225 3.00E-71 dispersed
Cam09g0182 Cam-Chr9:2580487 Cam04g0967 Cam-Chr4:23710415 8.20E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0182 K09873 - csv:101218611 451.055