Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0235 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACTATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCCCGATACACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTTGAGTGCCTCGCCAACTATCTAGCTGAATTAACACTGGTTGACTACAGATTCCTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGTTCAAAGCTGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.73 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIAKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQSNVKSKAKLKVEHSSNSEDPDTHHRVSGIKEEVTSDFRDDNWRSQSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2993662 2998393 + CaPI482276_09g002350.1 Cam09g0235 134564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0235 503 Gene3D - 244 492 - -
Cam09g0235 503 SMART cyclin_7 377 465 IPR013763 -
Cam09g0235 503 SMART cyclin_7 280 364 IPR013763 -
Cam09g0235 503 MobiDBLite consensus disorder prediction 131 208 - -
Cam09g0235 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cam09g0235 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cam09g0235 503 FunFam Mitotic cyclin 6 258 358 - -
Cam09g0235 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cam09g0235 503 FunFam Cyclin A1 360 492 - -
Cam09g0235 503 Gene3D - 258 371 - -
Cam09g0235 503 CDD CYCLIN_AtCycA_like_rpt1 234 369 - -
Cam09g0235 503 PANTHER CYCLINS 224 483 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam09g0235 503 CDD CYCLIN_AtCycA-like_rpt2 373 487 - -
Cam09g0235 503 PIRSF Cyclin_A_B_D_E 35 502 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cam09g0235 503 MobiDBLite consensus disorder prediction 101 120 - -
Cam09g0235 503 MobiDBLite consensus disorder prediction 161 198 - -
Cam09g0235 503 Pfam Cyclin, N-terminal domain 244 371 IPR006671 -
Cam09g0235 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1878 Cam-Chr5:27696219 Cam09g0235 Cam-Chr9:2993662 1.10E-112 dispersed
Cam08g2100 Cam-Chr8:26488282 Cam09g0235 Cam-Chr9:2993662 3.30E-77 dispersed
Cam09g0235 Cam-Chr9:2993662 Cam11g1887 Cam-Chr11:31406877 4.00E-46 dispersed
Cam08g1030 Cam-Chr8:16541368 Cam09g0235 Cam-Chr9:2993662 3.10E-83 transposed
Cam08g1748 Cam-Chr8:23722187 Cam09g0235 Cam-Chr9:2993662 1.40E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0235 K06627 - csv:101222299 924.85