Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0318 ATGCATACTCGTATGGCTCAAAGTGAAGAAGGGAAGAAGAGGGTTGAAATGGGAGAGAGGTTAGGAGGTTATGCTATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCTATTCCTTCTTCCCAATAATTGATGCCAGACCACACCTTGCTGGGTTTTCAATTTCTAGTACTGTTTTTGCTTCTCACACACATCCCATCTCTCTCATTGTTGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCGGAGGTTAAAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTTCTTGGAGTTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAACCTTAATGATGGAAAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGCCGCTAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACCATCGACTATAAACTGTTGGAAGCAGCAACTGACAACTTCAGCAAAAGCAATGTTTTGGGTGAAGGCGGTACGGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAAAATAGACAATGGAGGACCGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGTGTAAAATACGACATCAAAACATAATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTCGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAGTTGCACGGACCATCTCACGGATCGGCTTTAACTTGGCATATCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGCTTGGAATATCTTCACGAACATCGAAGTCCTCCTGTTGTTCATCGGGATTTGAAATCGTCAAATATCCTTTTAGATTCAGAGTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCAGGAACTTTGGGTTATGTCGCCCCAGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAAAACCCGTTGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAGCTCAGTGACAGATCAAAGCTACCGAAAATTGTCGATCCTGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTTTTATGTGTACAATCAGAACCGAGTTACCGACCGTTAGTTACCGACGTTTTGCATTCCCTCATCCCTCTTGTACCTGTAGAGCTTGGAGGATCTCTGAGAATTACAGAACCTCTGCATCCGAAAGTGCCTTCGTCGACCCGCTAA 1428 42.93 MHTRMAQSEEGKKRVEMGERLGGYAMNLLGILLPMWVFYSFFPIIDARPHLAGFSISSTVFASHTHPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIVSSTLLGVILLFLLCFWIYRRKTSNLNDGKCQKNLEASKGMPLNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTGHVYKACFNDKLLAAVKKIDNGGPDAEREFENEVNWLCKIRHQNIIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRSPPVVHRDLKSSNILLDSEFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTR 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3551294 3555405 + CaPI482276_09g003180.1 Cam09g0318 134647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0318 475 Gene3D Phosphorylase Kinase; domain 1 147 254 - -
Cam09g0318 475 SMART serkin_6 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g0318 475 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524(InterPro)
Cam09g0318 475 SUPERFAMILY Protein kinase-like (PK-like) 156 448 IPR011009 -
Cam09g0318 475 Pfam Protein tyrosine and serine/threonine kinase 182 390 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g0318 475 FunFam probable receptor-like protein kinase At1g80640 255 453 - -
Cam09g0318 475 ProSiteProfiles Protein kinase domain profile. 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g0318 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g0318 475 FunFam Protein kinase superfamily protein 146 254 - -
Cam09g0318 475 Gene3D Transferase(Phosphotransferase) domain 1 255 453 - -
Cam09g0318 475 CDD STKc_IRAK 185 451 - -
Cam09g0318 475 PANTHER OS01G0750732 PROTEIN 85 452 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0318 Cam-Chr9:3551294 Cam03g1572 Cam-Chr3:30707699 1.10E-69 dispersed
Cam05g1816 Cam-Chr5:27043462 Cam09g0318 Cam-Chr9:3551294 2.20E-61 wgd
Cam08g1820 Cam-Chr8:24290313 Cam09g0318 Cam-Chr9:3551294 1.50E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85417 PF00069 Pkinase 3.30E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0318 - - - 0.0