Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0341 ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATTTGAATCCACTTACTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACGGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCGATGCTGCTAAAGAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGTTGTGTTGCTCAGTATGA 1221 44.06 MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3775370 3778391 + CaPI482276_09g003410.1 Cam09g0341 134670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0341 406 Pfam Tub family 151 400 IPR000007 -
Cam09g0341 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cam09g0341 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cam09g0341 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cam09g0341 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cam09g0341 406 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Cam09g0341 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cam09g0341 406 PANTHER TUBBY-RELATED 126 404 - -
Cam09g0341 406 MobiDBLite consensus disorder prediction 31 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1140 Cam-Chr8:17745688 Cam09g0341 Cam-Chr9:3775370 1.80E-10 dispersed
Cam09g0341 Cam-Chr9:3775370 Cam05g2064 Cam-Chr5:29312176 2.30E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52533 PF01167 Tub 3.40E-45 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0341 K19600 - csv:101216780 783.097