Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0342 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTTTTTCTTTTTTCTCTTTGATGAATCTCCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGGCATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1227 48.66 MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICFSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKGIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3782107 3788407 - CaPI482276_09g003420.1 Cam09g0342 134671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0342 408 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 MobiDBLite consensus disorder prediction 345 364 - -
Cam09g0342 408 Pfam AP2 domain 197 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 ProSiteProfiles AP2/ERF domain profile. 50 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 MobiDBLite consensus disorder prediction 266 327 - -
Cam09g0342 408 MobiDBLite consensus disorder prediction 1 51 - -
Cam09g0342 408 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 277 - -
Cam09g0342 408 FunFam AP2-like ethylene-responsive transcription factor 197 258 - -
Cam09g0342 408 SUPERFAMILY DNA-binding domain 197 258 IPR016177 GO:0003677(InterPro)
Cam09g0342 408 CDD AP2 197 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 Gene3D AP2/ERF domain 197 258 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 MobiDBLite consensus disorder prediction 269 312 - -
Cam09g0342 408 SUPERFAMILY DNA-binding domain 126 163 IPR016177 GO:0003677(InterPro)
Cam09g0342 408 ProSiteProfiles AP2/ERF domain profile. 198 256 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 SMART rav1_2 198 262 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 SMART rav1_2 50 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 Gene3D AP2/ERF domain 50 164 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0342 408 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1404 Cam-Chr6:25467445 Cam09g0342 Cam-Chr9:3782107 2.00E-105 dispersed
Cam09g0342 Cam-Chr9:3782107 Cam10g1193 Cam-Chr10:25336420 2.30E-68 dispersed
Cam09g0342 Cam-Chr9:3782107 Cam05g2410 Cam-Chr5:32098728 2.00E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52534 PF00847 AP2 8.50E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0342 K09285 - csv:101206499 593.964