Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g0342 | ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGTTCTTTAATCTGTTTTTCTTTTTTCTCTTTGATGAATCTCCAATGTTTAGAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGGCATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA | 1227 | 48.66 | MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQGSLICFSFFSLMNLQCLEPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKGIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3782107 | 3788407 | - | CaPI482276_09g003420.1 | Cam09g0342 | 134671 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g0342 | 408 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | PRINTS | Ethylene responsive element binding protein signature | 144 | 164 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | MobiDBLite | consensus disorder prediction | 345 | 364 | - | - | |
Cam09g0342 | 408 | Pfam | AP2 domain | 197 | 248 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 162 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | MobiDBLite | consensus disorder prediction | 266 | 327 | - | - | |
Cam09g0342 | 408 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cam09g0342 | 408 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 36 | 277 | - | - | |
Cam09g0342 | 408 | FunFam | AP2-like ethylene-responsive transcription factor | 197 | 258 | - | - | |
Cam09g0342 | 408 | SUPERFAMILY | DNA-binding domain | 197 | 258 | IPR016177 | GO:0003677(InterPro) | |
Cam09g0342 | 408 | CDD | AP2 | 197 | 258 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | Gene3D | AP2/ERF domain | 197 | 258 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | MobiDBLite | consensus disorder prediction | 269 | 312 | - | - | |
Cam09g0342 | 408 | SUPERFAMILY | DNA-binding domain | 126 | 163 | IPR016177 | GO:0003677(InterPro) | |
Cam09g0342 | 408 | ProSiteProfiles | AP2/ERF domain profile. | 198 | 256 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | SMART | rav1_2 | 198 | 262 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | SMART | rav1_2 | 50 | 168 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | Gene3D | AP2/ERF domain | 50 | 164 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam09g0342 | 408 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam06g1404 | Cam-Chr6:25467445 | Cam09g0342 | Cam-Chr9:3782107 | 2.00E-105 | dispersed | |
Cam09g0342 | Cam-Chr9:3782107 | Cam10g1193 | Cam-Chr10:25336420 | 2.30E-68 | dispersed | |
Cam09g0342 | Cam-Chr9:3782107 | Cam05g2410 | Cam-Chr5:32098728 | 2.00E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52534 | PF00847 | AP2 | 8.50E-12 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g0342 | K09285 | - | csv:101206499 | 593.964 |