Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0376 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACCGCCGCCACAGCGAGTTCTTTCTCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGTTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 48.9 MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPFVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4132383 4133629 + CaPI482276_09g003760.1 Cam09g0376 134705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0376 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0376 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Cam09g0376 333 Gene3D - 170 220 - -
Cam09g0376 333 MobiDBLite consensus disorder prediction 292 333 - -
Cam09g0376 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Cam09g0376 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam09g0376 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Cam09g0376 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0376 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Cam09g0376 333 MobiDBLite consensus disorder prediction 46 68 - -
Cam09g0376 333 MobiDBLite consensus disorder prediction 310 333 - -
Cam09g0376 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 57 290 IPR050762 -
Cam09g0376 333 MobiDBLite consensus disorder prediction 1 32 - -
Cam09g0376 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Cam09g0376 333 Coils Coil 228 258 - -
Cam09g0376 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Cam09g0376 333 MobiDBLite consensus disorder prediction 46 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0376 Cam-Chr9:4132383 Cam10g1913 Cam-Chr10:33197246 6.60E-13 dispersed
Cam01g0618 Cam-Chr1:6715785 Cam09g0376 Cam-Chr9:4132383 1.80E-35 transposed
Cam01g1836 Cam-Chr1:31906267 Cam09g0376 Cam-Chr9:4132383 1.00E-53 transposed
Cam05g0047 Cam-Chr5:989828 Cam09g0376 Cam-Chr9:4132383 8.60E-49 transposed
Cam06g1533 Cam-Chr6:26792042 Cam09g0376 Cam-Chr9:4132383 4.70E-41 transposed
Cam07g0668 Cam-Chr7:13376876 Cam09g0376 Cam-Chr9:4132383 1.00E-34 transposed
Cam10g0242 Cam-Chr10:4195991 Cam09g0376 Cam-Chr9:4132383 1.30E-51 transposed
Cam10g0817 Cam-Chr10:17342588 Cam09g0376 Cam-Chr9:4132383 1.10E-50 transposed
Cam10g1410 Cam-Chr10:27763539 Cam09g0376 Cam-Chr9:4132383 1.70E-46 wgd
Cam10g1725 Cam-Chr10:31297265 Cam09g0376 Cam-Chr9:4132383 3.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52536 PF00046 Homeodomain 4.90E-15 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0376 K09338 - csv:101221600 577.785