Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0397 ATGGCGAAGACTAGGGCTCATGAGCTATCGCGAGCGTTAGCAGGTGATACATGCACAATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAAGTCTATTTTGGGCTTCTTTATCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGCTGTTGGCAACTTCATAAGGAAGGAACTTGATATATCAACGATTAAGACGCTGCGTTATATCGTCGACTTTGGTATGATATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCAACACTCATCTTAGCCTGTTCCATAATCCCATTTATTAGCTTTGCAAAGTCAAAAGAGATCAGTTTCATAATCTCCCTCTCAACTGTCCTCTCTAGCACTGCTTCTCCTGTACTAACCCGTTTGATTACCAGTCTTAAAATCGGTAGGTCAGATATAGGCCAGCTCGTCATTGCTGCCGGAATGCATTCTGATTTTATATCCACTCTCATGATCTGTATTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCCTTATAAAAGGTTTTCAATTAGGTATTCTATTATTGATCCAGTCAGTACTGACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGTGGTTGCCCTACTGTATTTGGTTACAATCCGATTCTCAGTGCATTTTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGGACAAATAATGACATGGATTAGGTTAATTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCAAAAACAGCTGGAAAGATAACTACATCTACGAGCTTGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAGAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTGCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTTCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGGATTACTCTTAGGAGAATGTTAGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGATGGGTCGTTGAGTGAGGGCCAAGCAGCTTTCCGATATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTGGAGAAAATTTCGAGGTCGTATGTATCTCAAAGTGTGGCAGTCATCTTCATTGGCGGTAAAGATGACCGAGAAGCATTAGCCTATGCCGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAGGACGATGAATGCTTTGCCTATTTTTACGAAAGGCATGTGGCTGGTGGGCACGTTGCGTACGTTGAAAAACACCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATACGCCCTCATAATCGTAGGTCGAGGTGGGAAGGTCAACTCGGTGTTAACTTTTGGGATGAATGACTGGCAACAGTGTCCAGAACTGGGTCCTATAGGGGACATTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGACTTTTCAATTATGTAG 2373 43.87 MAKTRAHELSRALAGDTCTIRLTEIFGRATKSILGFFIMVGLCNGVHYLLRPFSQPRITSDTIVGLAVGNFIRKELDISTIKTLRYIVDFGMICYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTLILACSIIPFISFAKSKEISFIISLSTVLSSTASPVLTRLITSLKIGRSDIGQLVIAAGMHSDFISTLMICIGYLFCKCQETRISLIKGFQLGILLLIQSVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCGCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIMTWIRLILLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSLVMVIVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTAAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMRDQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQSVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4345544 4349286 + CaPI482276_09g003970.1 Cam09g0397 134726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0397 790 PANTHER CATION/H + ANTIPORTER 37 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cam09g0397 790 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cam09g0397 790 Gene3D - 443 743 - -
Cam09g0397 790 Gene3D - 29 429 IPR038770 -
Cam09g0397 790 FunFam Cation/H(+) antiporter 28 30 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0397 K26731 - - csv:101211645 1475.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0397 Cam-Chr9:4345544 Cam09g1249 Cam-Chr9:14342956 2.40E-85 dispersed
Cam09g0397 Cam-Chr9:4345544 Cam06g0714 Cam-Chr6:9648894 8.20E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam02g0056 . 4 855 Antiporter Super Family AT2G13620 67.9 0.0e+00 1135.9
Cam07g0776 . 1 775 Antiporter Super Family AT1G64170 57.8 8.5e-240 827.0
Cam07g0769 . 47 821 Antiporter Super Family AT1G64170 57.6 1.2e-238 823.2
Cam07g0779 . 15 782 Antiporter Super Family AT1G64170 57.1 7.7e-233 803.9
Cam07g0766 . 15 780 Antiporter Super Family AT1G64170 56.9 5.5e-231 797.7
Cam07g0776 . 11 791 Antiporter Super Family AT4G23700 65.2 5.3e-290 993.8
Cam07g0769 . 46 838 Antiporter Super Family AT4G23700 64.0 1.3e-283 972.6
Cam07g0766 . 11 778 Antiporter Super Family AT4G23700 63.4 3.8e-280 961.1
Cam07g0779 . 9 779 Antiporter Super Family AT4G23700 63.8 3.8e-280 961.1
Cam07g0779 . 1 779 Antiporter Super Family AT5G41610 70.3 7.1e-311 1063.1
Cam07g0776 . 7 774 Antiporter Super Family AT5G41610 68.0 8.1e-299 1023.1
Cam07g0769 . 37 821 Antiporter Super Family AT5G41610 66.6 2.1e-294 1008.4
Cam07g0766 . 1 780 Antiporter Super Family AT5G41610 64.9 2.4e-287 984.9
Cam04g0889 . 12 824 Antiporter Super Family AT5G41610 51.0 2.0e-209 726.1
Cam07g0779 . 5 779 Antiporter Super Family AT3G17630 64.0 9.8e-273 936.4
Cam07g0776 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cam07g0769 . 45 819 Antiporter Super Family AT3G17630 62.1 8.1e-267 916.8
Cam07g0766 . 7 778 Antiporter Super Family AT3G17630 61.2 7.8e-262 900.2
Cam04g0889 . 12 826 Antiporter Super Family AT3G17630 51.6 9.4e-207 717.2
Cam04g0889 . 80 850 Antiporter Super Family AT3G53720 69.1 6.5e-290 993.4
Cam09g0397 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34