Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g0416 | ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCACTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA | 921 | 52.44 | MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 4516032 | 4519183 | + | CaPI482276_09g004160.1 | Cam09g0416 | 134745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g0416 | 306 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 221 | 245 | - | - | |
Cam09g0416 | 306 | Gene3D | Classic Zinc Finger | 201 | 273 | - | - | |
Cam09g0416 | 306 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 138 | 165 | IPR013087 | - | |
Cam09g0416 | 306 | PANTHER | ZINC FINGER PROTEIN WIP2 | 119 | 296 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cam09g0416 | 306 | SUPERFAMILY | beta-beta-alpha zinc fingers | 205 | 242 | IPR036236 | - | |
Cam09g0416 | 306 | Gene3D | Classic Zinc Finger | 137 | 160 | - | - | |
Cam09g0416 | 306 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cam09g0416 | 306 | SMART | c2h2final6 | 222 | 242 | IPR013087 | - | |
Cam09g0416 | 306 | SMART | c2h2final6 | 138 | 160 | IPR013087 | - | |
Cam09g0416 | 306 | SMART | c2h2final6 | 248 | 271 | IPR013087 | - | |
Cam09g0416 | 306 | MobiDBLite | consensus disorder prediction | 26 | 68 | - | - | |
Cam09g0416 | 306 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Cam09g0416 | 306 | FunFam | Zinc finger protein WIP2 | 191 | 273 | - | - | |
Cam09g0416 | 306 | SUPERFAMILY | beta-beta-alpha zinc fingers | 131 | 160 | IPR036236 | - | |
Cam09g0416 | 306 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 140 | 160 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g0416 | Cam-Chr9:4516032 | Cam10g1689 | Cam-Chr10:30892563 | 7.50E-88 | dispersed | |
Cam02g2408 | Cam-Chr2:36548527 | Cam09g0416 | Cam-Chr9:4516032 | 5.50E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52540 | PF00096 | zf-C2H2 | 0.0016 | CL0361 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g0416 | - | - | - | 0.0 |