Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0416 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCACTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 921 52.44 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4516032 4519183 + CaPI482276_09g004160.1 Cam09g0416 134745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0416 306 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 221 245 - -
Cam09g0416 306 Gene3D Classic Zinc Finger 201 273 - -
Cam09g0416 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Cam09g0416 306 PANTHER ZINC FINGER PROTEIN WIP2 119 296 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cam09g0416 306 SUPERFAMILY beta-beta-alpha zinc fingers 205 242 IPR036236 -
Cam09g0416 306 Gene3D Classic Zinc Finger 137 160 - -
Cam09g0416 306 MobiDBLite consensus disorder prediction 46 68 - -
Cam09g0416 306 SMART c2h2final6 222 242 IPR013087 -
Cam09g0416 306 SMART c2h2final6 138 160 IPR013087 -
Cam09g0416 306 SMART c2h2final6 248 271 IPR013087 -
Cam09g0416 306 MobiDBLite consensus disorder prediction 26 68 - -
Cam09g0416 306 MobiDBLite consensus disorder prediction 27 45 - -
Cam09g0416 306 FunFam Zinc finger protein WIP2 191 273 - -
Cam09g0416 306 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Cam09g0416 306 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0416 Cam-Chr9:4516032 Cam10g1689 Cam-Chr10:30892563 7.50E-88 dispersed
Cam02g2408 Cam-Chr2:36548527 Cam09g0416 Cam-Chr9:4516032 5.50E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52540 PF00096 zf-C2H2 0.0016 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0416 - - - 0.0