Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0478 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACTCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTTCGGTTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCGGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACAACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCAAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTCAACGGCGTTTTATCGGTTTCCAGGGCTTTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAATGTAGTTCGACAGGGGCTTCAACGTCACGATGACCCTGAGCGGTGTGCTCGAGACCTCGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA 1185 48.1 MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGISVDPTLNRVRASESVCSSSQSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4938292 4939989 - CaPI482276_09g004780.1 Cam09g0478 134807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0478 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cam09g0478 394 Gene3D - 65 359 IPR036457 -
Cam09g0478 394 CDD PP2Cc 85 355 IPR001932 -
Cam09g0478 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Cam09g0478 394 SMART PP2C_4 75 353 IPR001932 -
Cam09g0478 394 MobiDBLite consensus disorder prediction 59 79 - -
Cam09g0478 394 MobiDBLite consensus disorder prediction 65 79 - -
Cam09g0478 394 PANTHER PROTEIN PHOSPHATASE 2C 67 355 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cam09g0478 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Cam09g0478 394 FunFam Probable protein phosphatase 2C 22 70 358 - -
Cam09g0478 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Cam09g0478 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1785 Cam-Chr5:26650618 Cam09g0478 Cam-Chr9:4938292 3.50E-35 dispersed
Cam09g0333 Cam-Chr9:3673608 Cam09g0478 Cam-Chr9:4938292 3.10E-33 dispersed
Cam09g0478 Cam-Chr9:4938292 Cam11g1437 Cam-Chr11:27092904 2.10E-34 dispersed
Cam02g1773 Cam-Chr2:30886551 Cam09g0478 Cam-Chr9:4938292 9.40E-72 transposed
Cam11g1902 Cam-Chr11:31539920 Cam09g0478 Cam-Chr9:4938292 1.30E-89 transposed
Cam06g0425 Cam-Chr6:6378151 Cam09g0478 Cam-Chr9:4938292 4.80E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0478 K14803 - csv:101216626 713.761