Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0512 ATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGTGCTGAAAGGGTTCTCGCAAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGCGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAGATCGATCTCGAGGATGTCTTTAATTATAAGGATTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCACGACATATTAATGACACAAAGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCGAAGGGTCGCCCATTTACCATAAGAGAGGTCAAAGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCCGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGGAACTTAATTCTTCAACTTAGAGCATCTAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCCCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGGTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGGGGAGATGAAGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAACAAACTGGCACGATCGTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTCGGCGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAGCTTCTGAAACACATCATCAATGTTGCTCCGAGGGGAGTCTACACGACTGGTAAAGGGAGCAGTGGGGTTGGTTTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAGTCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTCAGCATTGCCAAGGCTGGGATCACCACATCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTCCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCGGCCGCAAGAAGATTGTCTCCTTATGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACTACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTTAGATTCTCTGAGACTGTGGCTCAGAGCGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGACGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGCGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTGAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2175 43.68 MSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 724
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 5215855 5221789 + CaPI482276_09g005120.1 Cam09g0512 134841
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0512 724 Gene3D - 149 277 IPR012340 -
Cam09g0512 724 FunFam DNA replication licensing factor MCM7 15 106 - -
Cam09g0512 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Cam09g0512 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Cam09g0512 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Cam09g0512 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 Gene3D - 317 649 IPR027417 -
Cam09g0512 724 Gene3D - 176 230 - -
Cam09g0512 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 18 694 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 SMART mcm 145 644 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 CDD MCM7 335 642 IPR008050 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Cam09g0512 724 Gene3D - 15 106 - -
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cam09g0512 724 FunFam DNA replication licensing factor MCM7 176 230 - -
Cam09g0512 724 FunFam DNA replication licensing factor MCM7 317 649 - -
Cam09g0512 724 Pfam MCM N-terminal domain 20 137 IPR027925 -
Cam09g0512 724 Pfam MCM OB domain 149 280 IPR033762 -
Cam09g0512 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2506 Cam-Chr1:36698475 Cam09g0512 Cam-Chr9:5215855 5.90E-95 dispersed
Cam02g0506 Cam-Chr2:5717152 Cam09g0512 Cam-Chr9:5215855 5.40E-96 dispersed
Cam09g0512 Cam-Chr9:5215855 Cam10g1373 Cam-Chr10:27295619 2.10E-88 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0512 K02210 - csv:101219064 1402.11