Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0549 ATGGCTACCGATTCTCATGCCCCTACTCCAAGAGGTCTTCTCTGTAATGCTGGGGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTTTGCCCTTTGGATGTTATCAAGACGAGATTTCAGGTTCATGGATTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGTCTCGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTACTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCTGATGGTGAAAATCGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCCGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTTAAGACCAGGCTACAGACACAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGTGGGCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTTGCGATCCAGTTTCCAACATATGAAAAAATAAAAAGTTATTTGGCTAGAAGAGACAATACGACAACGGACAAACTCACCGCACGCGATGTTGCGGTCGCCTCCTCTGTCTCCAAGATATTTGCTTCTACATTGACCTATCCACACGAGGTTGTACGATCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGGGTAGCCGATTGCGTAAAGAAAGTATTTCAACAAGATGGTCTCCCTGGTTTCTATCGAGGGTGTGCAACCAACCTTCTCAGGACGACGCCTGCTGCTGTCATCACATTTACAAGTTTTGAAATGATTCACCGTTTTCTTGTCAACTTATTTCCTCCCGATCCACATCCGCACACAATATGA 936 45.83 MATDSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLGSDGENRQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHPHTI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5485613 5489078 + CaPI482276_09g005490.1 Cam09g0549 134878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0549 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cam09g0549 311 Gene3D Mitochondrial carrier domain 2 103 IPR023395 -
Cam09g0549 311 Gene3D Mitochondrial carrier domain 104 301 IPR023395 -
Cam09g0549 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Cam09g0549 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 301 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Cam09g0549 311 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 106 - -
Cam09g0549 311 FunFam NAD+ transporter 107 302 - -
Cam09g0549 311 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cam09g0549 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Cam09g0549 311 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
Cam09g0549 311 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Cam09g0549 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
Cam09g0549 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Cam09g0549 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
Cam09g0549 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085(InterPro)
Cam09g0549 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Cam09g0549 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0597 Cam-Chr1:6449145 Cam09g0549 Cam-Chr9:5485613 2.90E-118 dispersed
Cam05g2607 Cam-Chr5:33670359 Cam09g0549 Cam-Chr9:5485613 5.60E-19 dispersed
Cam06g0524 Cam-Chr6:7310780 Cam09g0549 Cam-Chr9:5485613 4.40E-25 dispersed
Cam09g0549 Cam-Chr9:5485613 Cam09g0638 Cam-Chr9:6276810 1.20E-19 dispersed
Cam09g0549 Cam-Chr9:5485613 Cam05g1860 Cam-Chr5:27561889 6.40E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0549 K15115 - csv:101204681 581.637