Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0553 ATGGCTGCCAGAACAACCACCGCCGCCGCCTTCTACTTTCTCATCCTCATTTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAGAAATACCTCAGGTCCCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAGAACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGACACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGGGGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGACCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGATTTCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTGATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACCGTCGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAGGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCCTATACCAGCGGCCTCACGGACTAG 1674 54.54 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQTDDGGDDQIAVRDIVVVSQDGSGNFTTINEAISAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5515843 5519490 - CaPI482276_09g005530.1 Cam09g0553 134882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0553 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Cam09g0553 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Cam09g0553 557 FunFam Pectinesterase 29 179 - -
Cam09g0553 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857(InterPro)
Cam09g0553 557 SMART PMEI_2 22 176 IPR006501 GO:0004857(InterPro)
Cam09g0553 557 PANTHER PECTINESTERASE 10 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam09g0553 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam09g0553 557 Gene3D - 236 555 IPR012334 -
Cam09g0553 557 CDD PMEI-like_3 30 178 - -
Cam09g0553 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cam09g0553 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Cam09g0553 557 FunFam Pectinesterase 235 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2409 Cam-Chr5:32086869 Cam09g0553 Cam-Chr9:5515843 3.40E-150 dispersed
Cam09g0553 Cam-Chr9:5515843 Cam10g0006 Cam-Chr10:1694674 1.20E-104 dispersed
Cam09g0553 Cam-Chr9:5515843 Cam09g0554 Cam-Chr9:5538356 8.80E-111 tandem
Cam02g0120 Cam-Chr2:2378848 Cam09g0553 Cam-Chr9:5515843 4.60E-160 transposed
Cam11g1474 Cam-Chr11:27475114 Cam09g0553 Cam-Chr9:5515843 9.00E-180 transposed
Cam06g0495 Cam-Chr6:7060431 Cam09g0553 Cam-Chr9:5515843 5.10E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0553 K01051 - csv:101205321 1013.06