Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0554 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCACCATTTCCACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGCAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGATGCCTACGCCAATTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACCGACCGTCGGGCCCTCGACGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATTTGCGATCTAGCGCCGCCGCAGTCCGCTGCCCATCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGGCTGTGAGGAGACGGGTGGAGCAGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGGGAGGTGTTGCCGGAGTATGGGGCGGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACGAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGCGAGGCCGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCTTATTTTGAGAACGTGGAAATAGTAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGTATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCATAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGCAGCTTCGTTGGCTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTATCGCGAATGCGATATCTACGGTACCATCGACTTTATCTTTGGTAACGCTGCCGTCGTTTTCCAAAATTGCAACCTCTATGCTCGAAAACCCAACCCTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACGGTTTTTCTCCGGTCGTTTATTGGCCAGTTGGTTGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCGAATGTGACTGGACGAGCTACTTGGCCGGGGTATCGGGTCATTGCTAATGCAACGGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCGACCGGGATTCCTTTCTTCTCTGGTTTGGCTTGA 1668 51.2 MFGLKNRAQIPSNPTSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPQKLAGSALNFTAREVLDAYANCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASICDLAPPQSAAHHSHDLLTLVSAAMTNHRTCVDGFYNSSGAVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIVRAKANLMFIGDGIGKTLIKGDRNVIDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNVTGRATWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5538356 5544566 + CaPI482276_09g005540.1 Cam09g0554 134883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0554 555 Gene3D - 237 554 IPR012334 -
Cam09g0554 555 CDD PMEI-like_3 47 200 - -
Cam09g0554 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam09g0554 555 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Cam09g0554 555 PANTHER PECTINESTERASE 21 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam09g0554 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Cam09g0554 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Cam09g0554 555 FunFam Pectinesterase 237 554 - -
Cam09g0554 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cam09g0554 555 Pfam Plant invertase/pectin methylesterase inhibitor 46 194 IPR006501 GO:0004857(InterPro)
Cam09g0554 555 NCBIfam pectinesterase inhibitor domain 20 197 IPR006501 GO:0004857(InterPro)
Cam09g0554 555 SMART PMEI_2 40 194 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0042 Cam-Chr1:793315 Cam09g0554 Cam-Chr9:5538356 9.10E-138 dispersed
Cam01g2270 Cam-Chr1:35021190 Cam09g0554 Cam-Chr9:5538356 2.10E-120 dispersed
Cam05g1058 Cam-Chr5:9663370 Cam09g0554 Cam-Chr9:5538356 8.80E-133 dispersed
Cam09g0139 Cam-Chr9:2188255 Cam09g0554 Cam-Chr9:5538356 9.80E-137 dispersed
Cam09g0554 Cam-Chr9:5538356 Cam10g0006 Cam-Chr10:1694674 1.80E-127 dispersed
Cam09g0553 Cam-Chr9:5515843 Cam09g0554 Cam-Chr9:5538356 8.80E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0554 K01051 - csv:101205557 995.342