Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0600 ATGGCCGGTTCTATCAAGGTCCATGGAATTCCCACTTCCACAGCCACTGGTAGGGTTCTTGCTGCCCTTTACGAGAAGGGTCTTCAATTCGAGCTTGTGAATGTCAAATTACACGAAGGAGAACACAAGAGAGAGCCCTTCCTCTCGTTGAATCCCTTTGGTCAAGTTCCTGCGTTCCAAGATGGAGATCTGGCGCTTTTTGAATCTAGAGCGATCACGCAGTACATCTCGGGAAATTATGCTAGTAATGGAACCCAGTTGATTCCTCAAGATCCCAAGAAAGGGGCGCTCGTATTAACATGGATTGAGGTTGAGAGCCATCATTTTGACCCAGTAGCCATGAAATTGGTGTTCGAGCTGTGCTTGAAGCCAGTTTTTGGGTTGGGTGAGGCAGATCCTGCAGTAGTTGAGCAAAGTGAAGCCGAGTTAGGCAAAGTTCTTGATATCTACGAGAAAAGGCTGTCTGAATCCAAATACTTAGGAGGTGAGTCCTTCAGTTTGGCTGATCTGCACCATCTCCCTGTTCTGGGATACTTGTTGGCCACACAGTCCAAGAAACTCTTTGAATCCCGACCCCATGTCAATGCTTGGGTGGCTGATATCATAGCCAGGCCATCTTGGGCTAAAGTTCTTGAACTTCGCAAGTAA 648 47.38 MAGSIKVHGIPTSTATGRVLAALYEKGLQFELVNVKLHEGEHKREPFLSLNPFGQVPAFQDGDLALFESRAITQYISGNYASNGTQLIPQDPKKGALVLTWIEVESHHFDPVAMKLVFELCLKPVFGLGEADPAVVEQSEAELGKVLDIYEKRLSESKYLGGESFSLADLHHLPVLGYLLATQSKKLFESRPHVNAWVADIIARPSWAKVLELRK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5914759 5915565 - CaPI482276_09g006000.1 Cam09g0600 134929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0600 215 SFLD Main (cytGST) 4 213 - -
Cam09g0600 215 PANTHER GLUTATHIONE S-TRANSFERASE RHO 1 215 - GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)|GO:0043295(PANTHER)
Cam09g0600 215 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Cam09g0600 215 SUPERFAMILY GST C-terminal domain-like 75 214 IPR036282 -
Cam09g0600 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 215 IPR010987 -
Cam09g0600 215 SFLD Main.5: Phi-like 4 213 - -
Cam09g0600 215 CDD GST_N_Phi 5 77 - -
Cam09g0600 215 FunFam Glutathione S-transferase F2 89 211 - -
Cam09g0600 215 Gene3D - 91 215 - -
Cam09g0600 215 Pfam Glutathione S-transferase, C-terminal domain 111 205 IPR004046 -
Cam09g0600 215 Gene3D Glutaredoxin 3 88 - -
Cam09g0600 215 FunFam Glutathione S-transferase F2 4 88 - -
Cam09g0600 215 SUPERFAMILY Thioredoxin-like 4 89 IPR036249 -
Cam09g0600 215 CDD GST_C_Phi 93 211 IPR034347 -
Cam09g0600 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0600 K00799 - - csv:101212291 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0600 Cam-Chr9:5914759 Cam09g0602 Cam-Chr9:5928962 4.30E-82 dispersed
Cam09g0600 Cam-Chr9:5914759 Cam09g0601 Cam-Chr9:5927043 1.00E-91 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam09g0600 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.7e-65 244.6
Cam09g0602 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 4.0e-64 241.5
Cam09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 8.7e-59 223.8
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.7 1.2e-63 240.0
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 7.8e-60 227.3
Cam09g0602 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.9e-60 229.6
Cam09g0600 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Cam09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 2.5e-52 202.6
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.1e-64 241.1
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.1e-61 233.4
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 8.0e-57 217.2
Cam09g0600 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Cam09g0602 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 9.8e-63 236.9
Cam09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 8.5e-59 223.8
Cam09g0602 . 1 215 Glutathione S-transferase Gene Family AT2G47730 59.3 3.0e-69 258.8
Cam09g0600 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 6.9e-66 247.7
Cam09g0601 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Cam09g0603 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.9 5.8e-74 274.2
Cam09g0600 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Cam04g0773 . 3 214 Glutathione S-transferase Gene Family AT3G09270 54.2 8.5e-65 243.8
Cam04g0776 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 4.7e-63 238.0
Cam04g0761 . 6 216 Glutathione S-transferase Gene Family AT3G09270 52.4 1.0e-62 236.9
Cam04g0777 . 3 212 Glutathione S-transferase Gene Family AT3G09270 54.2 1.0e-57 220.3
Cam05g0289 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.7e-57 219.5
Cam05g2631 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.5e-37 152.1
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 2.0e-87 318.9
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 1.3e-81 299.7
Cam01g0865 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.1e-68 253.8
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G78380 52.2 2.1e-55 212.6
Cam07g1082 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 2.0e-79 292.4
Cam07g1084 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Cam07g1083 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.7 6.5e-70 260.8
Cam01g0865 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.4e-64 241.1
Cam07g1082 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.8e-80 295.8
Cam07g1084 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Cam07g1083 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.9 1.5e-74 276.2
Cam01g0865 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.5e-63 238.4
Cam07g1085 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.1e-53 206.8
Cam07g1082 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.2 1.9e-60 229.2
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 2.6e-90 328.6
Cam07g1084 . 1 218 Glutathione S-transferase Gene Family AT1G17180 64.2 4.0e-83 304.7
Cam07g1083 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 2.4e-80 295.4
Cam01g0865 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.6e-68 256.1
Cam07g1085 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 8.5e-57 217.2
Cam07g1082 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.3 6.9e-75 277.3
Cam07g1084 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Cam07g1083 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 9.6e-69 256.9
Cam07g1085 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 6.9e-51 197.6
Cam07g1082 . 3 214 Glutathione S-transferase Gene Family AT3G43800 58.8 1.9e-72 269.2
Cam07g1084 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.8e-70 260.8
Cam07g1083 . 3 212 Glutathione S-transferase Gene Family AT3G43800 52.1 1.9e-64 242.7
Cam07g1082 . 1 218 Glutathione S-transferase Gene Family AT1G53680 57.8 1.8e-70 262.7
Cam07g1084 . 2 218 Glutathione S-transferase Gene Family AT1G53680 56.6 1.1e-67 253.4
Cam01g0865 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 9.5e-64 240.4
Cam07g1085 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 7.5e-53 204.1
Cam02g0038 . 77 243 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Cam05g0259 . 61 217 Glutathione S-transferase Gene Family AT2G02390 51.0 9.3e-44 173.7
Cam02g0038 . 36 246 Glutathione S-transferase Gene Family AT2G02380 64.9 6.3e-76 280.8
Cam05g0259 . 18 217 Glutathione S-transferase Gene Family AT2G02380 53.5 5.0e-57 218.0
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41210 68.4 1.4e-92 336.3
Cam07g0822 . 122 358 Glutathione S-transferase Gene Family AT5G41240 66.7 1.5e-89 327.4
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02780 65.7 1.3e-84 309.7
Cam10g2033 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Cam02g1428 . 75 294 Glutathione S-transferase Gene Family AT5G02780 64.9 8.4e-79 290.4
Cam02g1428 . 29 292 Glutathione S-transferase Gene Family AT3G55040 60.4 1.3e-84 310.1
Cam10g2033 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 8.8e-78 287.3
Cam10g2034 . 6 226 Glutathione S-transferase Gene Family AT3G55040 60.1 1.3e-76 283.5
Cam10g2034 . 1 228 Glutathione S-transferase Gene Family AT5G02790 67.7 1.1e-89 326.6
Cam10g2033 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Cam02g1428 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.0 8.9e-81 297.0
Cam02g1404 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.4e-80 296.2
Cam05g1306 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.0e-72 266.9
Cam02g1404 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 4.9e-86 314.3
Cam05g1306 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 3.9e-75 278.1
Cam05g1306 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.7e-101 365.9
Cam02g1404 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 4.9e-72 268.1
Cam11g1625 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90