Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0605 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACGACGAGGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTTCAGTTAGGGCAAGTTTCACTCGCTCCTCTCCACCTCCACCGCTCCTCTTCCGCCGCCGCTGCTTGCTTCCAGGACTTGCCTGAATCTGAAGCACCGCCGACGGTCAACGTTTCTGACCCTCTCCCCTCCTCCTCTCCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAGGACTTCTTCTGCACCCCTGACTATATCACCCCGGACAATCAAAATTTGTTGAATGGTGTGGATAACAACGAGGAATGCATTCCTTGCCCAAAATCTCCAGAGAAGATTAATACTGTGAAAACTAAGAGAAAAATACATGAAAGTGTTTTAGTACATCCTCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAGCTTGGAAATGACATGTTTGGATCAGATGATGTGGATATGGAGAAAGAGACAATGGCCATGCCAAAGAAAGGAAACTATGTTTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACCTGAAAGATGCTTCAGATGTAGGCGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGTTTTTTTCCTGCTCTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAGGTATTAAAGAGAATTGACGGTTGCTTATATGCTGTCAAACAAAGCACAAGACCGTTGAATCAAGACATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATCGTTGGATACTACTCTTCATGGTTTGAAAATGAACAACTCTATATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATTGGCAGGTATTCCCACCCATTCTCTGAGGTAGATGCGCTGAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAGTAGCACATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACCCTTCTTGATAAGAGCCTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGACAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAAATTGCCCGAGGATCCACATTACCAGAAACGCATTTTATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCTGACCCGACACGGCGTCCTTCGGCAAGGGAAGTTCTTGAGAATCCAATATTTGATAAGGTTCATGCACCAAATTTTGGCTATAGCATGGTGCAAGTTTTGTAA 1494 42.9 MRRKSKTLRTTMTTRRKKMKGTLTRHLQVQLGQVSLAPLHLHRSSSAAAACFQDLPESEAPPTVNVSDPLPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDNNEECIPCPKSPEKINTVKTKRKIHESVLVHPLSPSLSGCEQVVELGNDMFGSDDVDMEKETMAMPKKGNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGRYSHPFSEVDALRALYQIAKALLFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIARGSTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPTRRPSAREVLENPIFDKVHAPNFGYSMVQVL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5946847 5951508 + CaPI482276_09g006050.1 Cam09g0605 134934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0605 497 SMART serkin_6 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g0605 497 FunFam Wee1-like protein kinase 318 485 - -
Cam09g0605 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g0605 497 ProSiteProfiles Protein kinase domain profile. 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g0605 497 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 35 477 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cam09g0605 497 FunFam WEE protein kinase 229 317 - -
Cam09g0605 497 Gene3D Phosphorylase Kinase; domain 1 229 318 - -
Cam09g0605 497 Pfam Protein kinase domain 239 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g0605 497 SUPERFAMILY Protein kinase-like (PK-like) 232 489 IPR011009 -
Cam09g0605 497 Gene3D Transferase(Phosphotransferase) domain 1 319 485 - -
Cam09g0605 497 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0605 Cam-Chr9:5946847 Cam05g0487 Cam-Chr5:4299491 1.80E-22 dispersed
Cam09g0605 Cam-Chr9:5946847 Cam06g0661 Cam-Chr6:8896762 1.70E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85426 PF00069 Pkinase 6.00E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0605 K06632 - csv:101213255 885.945