Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0608 ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGCTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATACTAACAATAATAATCATGATGCATGA 477 44.65 MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNTNNNNHDA 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5996688 5997164 - CaPI482276_09g006080.1 Cam09g0608 134937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0608 158 SUPERFAMILY Histone-fold 46 155 IPR009072 GO:0046982(InterPro)
Cam09g0608 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Cam09g0608 158 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cam09g0608 158 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cam09g0608 158 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cam09g0608 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cam09g0608 158 FunFam Nuclear transcription factor Y subunit B-3 40 158 - -
Cam09g0608 158 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam09g0608 158 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1715 Cam-Chr3:32282624 Cam09g0608 Cam-Chr9:5996688 1.10E-30 dispersed
Cam06g1651 Cam-Chr6:27931917 Cam09g0608 Cam-Chr9:5996688 4.90E-12 dispersed
Cam09g0608 Cam-Chr9:5996688 Cam10g0401 Cam-Chr10:6374111 3.30E-39 dispersed
Cam09g0608 Cam-Chr9:5996688 Cam02g1439 Cam-Chr2:27227124 5.00E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52554 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0608 K08065 - csv:101204763 275.018