Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0609 ATGGGAATCTCTAACATTACAGGTGAAATTCATCATCCAAACTTGTCTTCAGGCAACAATGTGGAAGATCAATTAGAAGAAGTTGAACAAAACAATAATCAACATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAACTCCCATGGCTCATCTAATTCACTTGATCCCCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTGCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAGGGTCTATGTGTGCCCCGAACTGACATGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTATTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAATAATAATAATAATAATAATGATAACATAGAACCAATCTCAATTATCTCCACTCCAAAACTCCCTCCTTTTGGCACATCAATCATCCCTGAATTCAACCCTTATGATCAAAAAAACCCTTTTAAATCCCTCCCCCAAGAACTCAGCAACTCGGCCCCGGCCACCGGTGCACCTGGAGGCTTGTTCATGGTCGGACCCCGAAGCAGCAACAACTCTTCTTCTTTTTCAAGCCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGTTGCCTTCAGGATTCTGGGTCGGCAACAGCAGCATTGGTAACGTCGGCCACCGCCTTGTTACAGAAAGCTGCGCAAATAGGAGCAACGACAAGCTCCGTTGGTGTTCTGAAGTCACCATTGTTGGAAATACCTCATTCTGATGATCAAGCAGACATGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGAAAGGACAAGAGAATTGTAGTAGCAACAACTCAAGTTTTGTCGTCCACGAAAAGGGCCAGTGGCGACCAATGTCGAGATTTTCCGGTGGCATTAACGGCGGCGAAGAGAGTCAGATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGCTGAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAGGAGATGATGCCAATTATGAAGCATTTTGAGATGCACAACTTTCATGGGGATTCAAATGTTGACAAATCTATATTTGAGTATTGA 1476 43.7 MGISNITGEIHHPNLSSGNNVEDQLEEVEQNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDPHQQRVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKRVYVCPELTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEENNKLKQGILNNNNNNNDNIEPISIISTPKLPPFGTSIIPEFNPYDQKNPFKSLPQELSNSAPATGAPGGLFMVGPRSSNNSSSFSSLKLSSTTSSRFSCLYDSKNGCLQDSGSATAALVTSATALLQKAAQIGATTSSVGVLKSPLLEIPHSDDQADMVGMNMGMYGHMMMMKGQENCSSNNSSFVVHEKGQWRPMSRFSGGINGGEESQMMTLDLLGERGWRLRQLQGDESHHHQQEMMPIMKHFEMHNFHGDSNVDKSIFEY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6022191 6025404 + CaPI482276_09g006090.1 Cam09g0609 134938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0609 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Cam09g0609 491 MobiDBLite consensus disorder prediction 40 62 - -
Cam09g0609 491 FunFam protein indeterminate-domain 12-like 76 144 - -
Cam09g0609 491 Coils Coil 18 38 - -
Cam09g0609 491 SMART c2h2final6 97 119 IPR013087 -
Cam09g0609 491 SMART c2h2final6 138 168 IPR013087 -
Cam09g0609 491 SMART c2h2final6 173 193 IPR013087 -
Cam09g0609 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 459 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam09g0609 491 Gene3D Classic Zinc Finger 75 142 - -
Cam09g0609 491 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 172 196 - -
Cam09g0609 491 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cam09g0609 491 FunFam protein indeterminate-domain 5, chloroplastic-like 151 230 - -
Cam09g0609 491 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 134 168 - -
Cam09g0609 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Cam09g0609 491 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Cam09g0609 491 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 199 239 - -
Cam09g0609 491 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Cam09g0609 491 Gene3D Classic Zinc Finger 152 231 - -
Cam09g0609 491 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1719 Cam-Chr3:32298812 Cam09g0609 Cam-Chr9:6022191 1.60E-88 dispersed
Cam08g1994 Cam-Chr8:25730325 Cam09g0609 Cam-Chr9:6022191 4.60E-81 dispersed
Cam09g0609 Cam-Chr9:6022191 Cam10g2003 Cam-Chr10:33907426 1.10E-80 dispersed
Cam09g0609 Cam-Chr9:6022191 Cam04g0835 Cam-Chr4:22587034 4.40E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52555 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0609 - - - 0.0