Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0719 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACGGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA 1530 46.27 MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPRNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7185356 7188643 + CaPI482276_09g007190.1 Cam09g0719 135048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0719 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cam09g0719 509 MobiDBLite consensus disorder prediction 487 509 - -
Cam09g0719 509 FunFam protein indeterminate-domain 12-like 57 125 - -
Cam09g0719 509 Gene3D Classic Zinc Finger 57 126 - -
Cam09g0719 509 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cam09g0719 509 Gene3D Classic Zinc Finger 147 212 - -
Cam09g0719 509 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cam09g0719 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 449 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam09g0719 509 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cam09g0719 509 MobiDBLite consensus disorder prediction 272 347 - -
Cam09g0719 509 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cam09g0719 509 MobiDBLite consensus disorder prediction 41 62 - -
Cam09g0719 509 SMART c2h2final6 154 174 IPR013087 -
Cam09g0719 509 SMART c2h2final6 78 100 IPR013087 -
Cam09g0719 509 SMART c2h2final6 119 149 IPR013087 -
Cam09g0719 509 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cam09g0719 509 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cam09g0719 509 MobiDBLite consensus disorder prediction 256 347 - -
Cam09g0719 509 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1069 Cam-Chr2:17850030 Cam09g0719 Cam-Chr9:7185356 4.30E-89 dispersed
Cam02g1803 Cam-Chr2:31142190 Cam09g0719 Cam-Chr9:7185356 1.00E-12 dispersed
Cam05g1960 Cam-Chr5:28475612 Cam09g0719 Cam-Chr9:7185356 1.00E-84 dispersed
Cam07g1187 Cam-Chr7:26253782 Cam09g0719 Cam-Chr9:7185356 1.50E-30 dispersed
Cam09g0719 Cam-Chr9:7185356 Cam11g0080 Cam-Chr11:2486128 2.20E-84 dispersed
Cam09g0719 Cam-Chr9:7185356 Cam01g1981 Cam-Chr1:33100665 3.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52559 PF00096 zf-C2H2 0.0051 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0719 K25870 - csv:101208253 785.793