Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0728 ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCGTCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCTGCTGCTGCTGCGGCAGCGGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG 957 52.25 MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP 318
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 7333586 7336722 + CaPI482276_09g007280.1 Cam09g0728 135057
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0728 318 Gene3D - 157 219 IPR036638 GO:0046983(InterPro)
Cam09g0728 318 MobiDBLite consensus disorder prediction 143 166 - -
Cam09g0728 318 MobiDBLite consensus disorder prediction 242 261 - -
Cam09g0728 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 221 IPR036638 GO:0046983(InterPro)
Cam09g0728 318 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983(InterPro)
Cam09g0728 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 103 297 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam09g0728 318 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Cam09g0728 318 FunFam Basic helix-loop-helix transcription factor 157 219 - -
Cam09g0728 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1654 Cam-Chr3:31655330 Cam09g0728 Cam-Chr9:7333586 1.70E-74 dispersed
Cam06g1362 Cam-Chr6:25018314 Cam09g0728 Cam-Chr9:7333586 1.50E-46 dispersed
Cam07g0017 Cam-Chr7:1376871 Cam09g0728 Cam-Chr9:7333586 3.40E-17 dispersed
Cam09g0728 Cam-Chr9:7333586 Cam09g0835 Cam-Chr9:8577032 6.70E-15 dispersed
Cam09g0728 Cam-Chr9:7333586 Cam02g1763 Cam-Chr2:30763674 1.10E-44 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52561 PF00010 HLH 1.20E-07 No_clan Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0728 - - - 0.0