Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0753 ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAATCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCGGATTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTACAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGAAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCGACCCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCCAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGGAGAAGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTAGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 678 47.94 MSIVNDLFGNYQEDFLWNNNQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAQAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMEKKKKKQTVVVFEDLGVEYLEELLSLTS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7671872 7672549 + CaPI482276_09g007530.1 Cam09g0753 135082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0753 225 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Cam09g0753 225 Coils Coil 183 203 - -
Cam09g0753 225 PANTHER DNA-BINDING DOMAIN 62 196 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam09g0753 225 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677(InterPro)
Cam09g0753 225 SMART rav1_2 93 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 Pfam AP2 domain 93 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 CDD AP2 94 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0753 225 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g0098 Cam-Chr7:2132818 Cam09g0753 Cam-Chr9:7671872 1.30E-41 dispersed
Cam09g0753 Cam-Chr9:7671872 Cam10g0235 Cam-Chr10:4112772 1.90E-19 dispersed
Cam09g0752 Cam-Chr9:7659532 Cam09g0753 Cam-Chr9:7671872 3.20E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52567 PF00847 AP2 1.10E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0753 K14516 - csv:101205053 312.383