Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0783 ATGATGGAGGCAGCTTGTAGACAGAGACCATGGATACTATTTGACCAAAACAAGGAGGATTCTTTGGAGTTCGAATCTATGGAGCAGAACCCCCCTCCACAATCTGACCTTTCAAAAGGGGTAGCTCATGGATGTCCAGAATGCAGTGACTGTCTGAAGGTCACTGCAAGGTGGCGGCCAGACGATGCAAGATCAGATATTCTTGAAGAGGCTGCTGTTTTTTATCCAACAGAGGAGGAATTTGCAGATACACTTCATTATATAGAAAGAATACGTTCAAGAGCAGAGTCAAGTGGAATCTGTCGCATAGTTCCTCCTCCATCATGGTTGCCTCCATGTCTTTTGAAGGGAAAGGAAACTTGGGAAAATTCTCCTTTCCTAGCCCACTATCAGCGGATTGATGGGTTACAGAAGACTTATGCATGTGGTCAATTTTCTAACCATAGTGGAAACATGAAGAATAAGAGGAGAAGGTTAGAGTATGCGTGTGTTAATGGTCATTTGATGGATCCTGATGAAAGTTGTGGTAGTGATGAGAAAGGCCCAAACTCAGATCTTGGTCGAGAGTTTACTCTAAAAGCTTTTAAAAGCTATGCCGATGACTTTAAATCCCAGTATTTCAGCAGTGGAAATAAGTGCACAAATACAGAAACAAAGTCATCCATGCTTCAAGAGCAGTGGGAACCGTTGGTGGATCAAGTAGAGGGTGAATATAGACGCATTCTCGAGAATCCAACTGAACAAATTGAGGTGCTATGTGGTGATAGTTCGGGTAGCCTTTCACTTGGCAGCGGATTTCCATCATCATCCAGTCCTTTGACTGAGCCAGGTCATGCTGATCATATGGACTCTGGATGGAACTTAAATAATTTACCTAGACTACCTGGTTCACTTCTTTCTTTGGATAGCTTCAAGACATATTCTATTTTGTCACCTCAAGTATGCGTGGGAATGTGCTTTTCTACCGCTTGTTGGCGAGTTGAAGAACACCACTTACCTTTGTTATGTTACTTGCACTTGGGAGCTCCTAAAATATGGTATGGCATTCCAGGAAGATACATTGATAAATTTGACGTAGCCATGAAGAGCCTTCCGGAATTTTTTGTGGAACAGAAAAGGTCTCGTAGAGGAATGGTCAATCAACCATCAATTGCCACATTGAAGAGAGAAGGTGTACCAATTTACCGTTGCATTCAAAATGCAGGAGAGTTTGTTCTCGTCTTTCCAGGAGCATGTCATTCAGGATTTAACTGTGGGTTTAATGTTACTGAAGAAGCCAATTTTGCTCCCCTTGACTGGTTGCCTCACGGTTATAATGCTACAGAGCTGTACTCTATAGAGAGAAGGAAGACGTTAATATCCTTCGATAGGCTGTTGCTTGGAGCAGCCACTGAAGCTGTGAAGGCACAGTGGGAACTCTCATTATGCAGGAAGGAAACCAAAGATAATTTACGATGGAAAAATGCCTGTGGAAAGCATGGGATATTAGCCCAGACATTCAAGTCTCGCATCAAAAGTGAAAGTCTCAGGAGGGAGTATCTTGCGACAGCTTCACAGACACGTGAAGTAACCGAAAGTTTTGATGCTGTCAGGAAGCGCGAATGCAGCATTTGCCTTTATGACTTACACTTGTCTGCAGCTGGTTGTTCATGTTCTGCTGATAGGTACTCTTGTTTGAATCACGCTAAGCAACTCTGTTCTTGTGCTTGGGTCAACAAATTCTTTGTCGTGCGGTACCAAATGGCCAACTTAAATCTTCTTCTTGAAGCCTTGGAAGGAAAACTAAGTGCAGTCTACAAATGGGCCAAAGAGAATCTTGGACTTGCTGTGCATTCCTACAAGAATAGTTCACTGCAATCTCAGCCTGCTGATACACCCCAGTCTTCACAAGGGCATCAATCCGAGGATGCAGAATCTCCAAATACTTTTAATAACTCGATCAATAGAATTAAGGCAGAGATAAAGGCACGTCTTCTTCAAGCGAAAACCTTGAAGAATATGAAAGGAAATGACAGGGTAATAGAATCCGTGGATGCAGTTAAAGACAATGGTATTGTCACAAATTTGGATTCGAGAATTCCAGCAGAAAAAACCGCATTGAAGCTACAGCCAGTGAGTTCGAATGAGCTCAAAGGAAAAGAGTGTACATCAACCCCAGCAGTAGTTTTAAATGAAAGAGGAGATGATTTAATCTTTTCACTCAATTTGGAGTCTTTTGAAACTTTACCTGAGAACTCAGTCTCAAGCTTCTCTGAATCCGATGACGATTGGTCAGATTCTGGCTTTTAA 2289 42.38 MMEAACRQRPWILFDQNKEDSLEFESMEQNPPPQSDLSKGVAHGCPECSDCLKVTARWRPDDARSDILEEAAVFYPTEEEFADTLHYIERIRSRAESSGICRIVPPPSWLPPCLLKGKETWENSPFLAHYQRIDGLQKTYACGQFSNHSGNMKNKRRRLEYACVNGHLMDPDESCGSDEKGPNSDLGREFTLKAFKSYADDFKSQYFSSGNKCTNTETKSSMLQEQWEPLVDQVEGEYRRILENPTEQIEVLCGDSSGSLSLGSGFPSSSSPLTEPGHADHMDSGWNLNNLPRLPGSLLSLDSFKTYSILSPQVCVGMCFSTACWRVEEHHLPLLCYLHLGAPKIWYGIPGRYIDKFDVAMKSLPEFFVEQKRSRRGMVNQPSIATLKREGVPIYRCIQNAGEFVLVFPGACHSGFNCGFNVTEEANFAPLDWLPHGYNATELYSIERRKTLISFDRLLLGAATEAVKAQWELSLCRKETKDNLRWKNACGKHGILAQTFKSRIKSESLRREYLATASQTREVTESFDAVRKRECSICLYDLHLSAAGCSCSADRYSCLNHAKQLCSCAWVNKFFVVRYQMANLNLLLEALEGKLSAVYKWAKENLGLAVHSYKNSSLQSQPADTPQSSQGHQSEDAESPNTFNNSINRIKAEIKARLLQAKTLKNMKGNDRVIESVDAVKDNGIVTNLDSRIPAEKTALKLQPVSSNELKGKECTSTPAVVLNERGDDLIFSLNLESFETLPENSVSSFSESDDDWSDSGF 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7953886 7958058 - CaPI482276_09g007830.1 Cam09g0783 135112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0783 762 Gene3D Cupin 56 429 - -
Cam09g0783 762 MobiDBLite consensus disorder prediction 743 757 - -
Cam09g0783 762 MobiDBLite consensus disorder prediction 743 762 - -
Cam09g0783 762 Pfam C5HC2 zinc finger 535 585 IPR004198 -
Cam09g0783 762 SMART JmjN_1 70 111 IPR003349 -
Cam09g0783 762 SMART cupin_9 280 445 IPR003347 -
Cam09g0783 762 Pfam jmjN domain 73 105 IPR003349 -
Cam09g0783 762 ProSiteProfiles JmjC domain profile. 280 445 IPR003347 -
Cam09g0783 762 Pfam JmjC domain, hydroxylase 313 428 IPR003347 -
Cam09g0783 762 SUPERFAMILY Clavaminate synthase-like 279 472 - -
Cam09g0783 762 ProSiteProfiles JmjN domain profile. 71 112 IPR003349 -
Cam09g0783 762 MobiDBLite consensus disorder prediction 617 643 - -
Cam09g0783 762 PANTHER LYSINE-SPECIFIC DEMETHYLASE 64 644 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0783 K11446 - - csv:101221486 1281.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0783 Cam-Chr9:7953886 Cam11g1090 Cam-Chr11:21067884 1.40E-175 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam11g1090 . 26 1257 JUMONJI Transcription Factor Family AT1G08620 54.6 0.0e+00 1249.6
Cam09g0783 . 5 610 JUMONJI Transcription Factor Family AT1G08620 50.4 4.5e-168 589.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006657 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52570 PF02373 JmjC 9.80E-30 CL0029 Cam TR