Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam09g0788 | TCAAATCCAGTTCTTGAAGCGTTTGGCAATGCAAAAACAGTAAGAAACAATAATTCAAGCCGTTTTGGGAAATTCGTTGAGATCCAATTTGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGATATAAGCTAGGAAATCCCAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTCCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTGAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCCTTGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCAGAGGACGTCATCAAGAGAAGTCTTGATCCACTTGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATACTCTCGTTTGTTTGACTGGTTGGTAGATAAAATCAATTTTTCCATCGGACAAGATCCTGGCTCAAAATATCTGATCGGAGTACTTGATATTTATGGTTTTGAGAGCTTTCAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAACAACATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATAGAGTTTGTTGATAATCAAGATGTCCTCGATCTCATCGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTCCCGAAATCAAATCATGAAACATTTTCACAAAAGCTATATCAGACCTTCAAAAATCATAAACGCTTCACCAAGCCAAAATTGGCCCGCTCAGATTTTACGATTGTTCATTATGCTGGAGATGTTCTATATCAGTCAGATCAGTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGCCTCTTCGCTCCTCATCCTGAGGAGACGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACGTTAAATTCAACTGAACCCCATTATATAAGATGTGTGAAGCCCAATACTGTCCTGCAACCTGCCATCTTTGAGAATGCTACTGTTATGCAACAATTACGTTCTGGAGGTGTTTTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGCAGCGTGCGAAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGAAATCAAAAATTTTCCTAAGAGGTAATTTAATGGCCGAACTAGATGCACAAAGAACAGGAATATATAGTGCCGCTGCTATACTTATACAGAAGCATTTCAGAGCTCGAAATGATTGTAAAAAGTACATTGCCATGCGAAGAGCCTGCATTCGTCTACAATCATATTGGAGAGGTGTTCTTGCCCGTGAGTCATATGAAATTAGGAGAAGGGAAGCAGCTGCTGTCAAAATTCAAAAGAATGTTCGTGCATACCTTGCCAGGAGCCGTCATATTAAAATGAGGATCTCTACAGTTTTTCTTCAGGCTGGTATGCGTGCAATGGTTGCTCGGAGTGAATACAGAAACAGGAGGCAGGTTAAGGCTGCAAAAGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCGTCGAGGTATAAGACGGTTAAAAAATCATCAACCAATTCACAATGCGGATTGTACTCAAAAACTTCTGGTGAAGGTCTTAAGAAGCAAAGGATGGCTAACTTGGAAGAAACAAAGGAGGATCTGGTTTTGCCTGCGTTGCTCAACAGCAGTACAGACACCATTGATGAAACAATTGAAATGATTGCCATGGAAAGCCGTGTTTCTCCACAAGAAATAGAAGAAGCATACTTTATTATTAAAGAGCCCGGTAGTCCAGTTAAAGGTGCAGATAAGGTGGTCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCAAGTTGCAGGCTGAAAGGCAAAGAGCTAATGAGTATGAAAGGAAGTATGCTGTAACGCAGAAAGCAAATGAAGAAGGACGTAGAAAACTAAAAAAAACCGAAAGGAAGGTGCATCAACTTCAGGACTACATAAACAGGATGATACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCGTGGGTACTTCTAGATCGGATGCATCTAGTTCTTCTCGGAACGAGGTTCTGACGGATGCCACATCCAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTTCCAAGTCCATCTATACCAACTTTCTCTTCATTCGGTACCAATACTTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGATCTGACAGTGACAGGGAAGGGGGATTTTCTGACTACTTCTAA | 2700 | 40.22 | SNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLHMTAELLMCDPLALEDALCKRMMITPEDVIKRSLDPLGATVSRDGLAKTIYSRLFDWLVDKINFSIGQDPGSKYLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSNHETFSQKLYQTFKNHKRFTKPKLARSDFTIVHYAGDVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVAGLFAPHPEETAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEKAACEKILEKMGLKGYLIGKSKIFLRGNLMAELDAQRTGIYSAAAILIQKHFRARNDCKKYIAMRRACIRLQSYWRGVLARESYEIRRREAAAVKIQKNVRAYLARSRHIKMRISTVFLQAGMRAMVARSEYRNRRQVKAAKVIQSYWRQYRTSSRYKTVKKSSTNSQCGLYSKTSGEGLKKQRMANLEETKEDLVLPALLNSSTDTIDETIEMIAMESRVSPQEIEEAYFIIKEPGSPVKGADKVVTLRAEVANLKAKLQAERQRANEYERKYAVTQKANEEGRRKLKKTERKVHQLQDYINRMIHCMSNQISEMKMIVGTSRSDASSSSRNEVLTDATSSCSDSSSEDFTFPVPSPSIPTFSSFGTNTFQLIVQDISAAEIPGSDSDREGGFSDYF | 899 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 8002973 | 8017482 | - | CaPI482276_09g007880.1 | Cam09g0788 | 135117 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam09g0788 | 899 | ProSiteProfiles | IQ motif profile. | 590 | 617 | - | - | |
| Cam09g0788 | 899 | Coils | Coil | 747 | 802 | - | - | |
| Cam09g0788 | 899 | SMART | iq_5 | 589 | 611 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | SMART | iq_5 | 564 | 586 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | SMART | iq_5 | 612 | 634 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | SMART | iq_5 | 541 | 563 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | SMART | iq_5 | 637 | 659 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | Gene3D | - | 473 | 540 | - | - | |
| Cam09g0788 | 899 | PRINTS | Myosin heavy chain signature | 236 | 264 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | PRINTS | Myosin heavy chain signature | 289 | 317 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | PRINTS | Myosin heavy chain signature | 3 | 30 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | Gene3D | Kinesin motor domain | 1 | 469 | IPR036961 | - | |
| Cam09g0788 | 899 | ProSiteProfiles | IQ motif profile. | 613 | 642 | - | - | |
| Cam09g0788 | 899 | Gene3D | - | 59 | 117 | - | - | |
| Cam09g0788 | 899 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 119 | 408 | - | - | |
| Cam09g0788 | 899 | PANTHER | MYOSIN | 1 | 830 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cam09g0788 | 899 | MobiDBLite | consensus disorder prediction | 825 | 851 | - | - | |
| Cam09g0788 | 899 | Pfam | IQ calmodulin-binding motif | 640 | 659 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | Pfam | IQ calmodulin-binding motif | 592 | 610 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | Pfam | IQ calmodulin-binding motif | 566 | 585 | IPR000048 | GO:0005515(InterPro) | |
| Cam09g0788 | 899 | Gene3D | - | 246 | 430 | - | - | |
| Cam09g0788 | 899 | FunFam | unconventional myosin-Va | 592 | 639 | - | - | |
| Cam09g0788 | 899 | ProSiteProfiles | IQ motif profile. | 638 | 667 | - | - | |
| Cam09g0788 | 899 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 592 | IPR027417 | - | |
| Cam09g0788 | 899 | FunFam | Myosin 2 | 119 | 232 | - | - | |
| Cam09g0788 | 899 | ProSiteProfiles | Myosin motor domain profile. | 1 | 539 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | FunFam | Class V myosin | 246 | 389 | - | - | |
| Cam09g0788 | 899 | ProSiteProfiles | IQ motif profile. | 565 | 594 | - | - | |
| Cam09g0788 | 899 | Gene3D | - | 542 | 591 | - | - | |
| Cam09g0788 | 899 | Gene3D | - | 592 | 643 | - | - | |
| Cam09g0788 | 899 | FunFam | Myosin heavy chain | 59 | 114 | - | - | |
| Cam09g0788 | 899 | Pfam | Myosin head (motor domain) | 1 | 527 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | SMART | MYSc_2a | 1 | 540 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cam09g0788 | 899 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 591 | 664 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam09g0356 | Cam-Chr9:3900280 | Cam09g0788 | Cam-Chr9:8002973 | 9.40E-259 | dispersed | |
| Cam09g0788 | Cam-Chr9:8002973 | Cam11g1870 | Cam-Chr11:31259887 | 1.00E-84 | dispersed | |
| Cam09g0788 | Cam-Chr9:8002973 | Cam05g0428 | Cam-Chr5:3877070 | 3.80E-257 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam09g0788 | K10357 | - | csv:101220626 | 1644.79 |