Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0859 ATGGAAAACACTAAACTTTCATTACCTCTCTTTGCTGCTTTACTCCTCACAAATGCTATTGTTGTTTTAGCCAATTCCAATGAGAATAGTGACATGAATAATAACTTGAGTGTCATAGAAAACTCATGTGCCATTACTCTTTATCCTCAACTATGTCAATCAACAATATACTCCATCGTCGGAACATCCAACTTGTTGAGTTTGAAAGATATTGTTGAAGTGTCATTGAGTGTTGCTGTTGATGCAGCTAAGCATAACTACAAAAACATCAACAAACTTTGGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCGCTTCGTGATTGTGTGGAAACCACAGACAGGGCGATTTATGAACTTCACAAGGCCGTAGAGGATCTTCGTGAGTATCCCAACAAGAAATCTCTTACCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAGACTTGTTTGGAGGGATTGTCACATGAGAAAACAGAGAAAAGGGTGTTGAAGCTGATTGAAAGCACACATATTCACGTCACAAAGTTGTGTAGTAATACATTGGCTTTGGTTAAGAAATTGACACACACTCATTTTACAGATCAAAAAACCAATAAAATAACCTCTGACCACCCCACAATTGTACTCTTTTCCCACCATGTCGATCAGGAGGAAGGTGAGAATAGAGGAATTAGGGAGGATTTAGAAGACGGAATAAAGTGGCCAGAATGGATGGCGAGCCGCGACCGGAGGCTTTTGGAGTCATCGTACGAAGCTACGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGGTGGAGTTTACAAGGAAAATGTTGATGTGCCAAGTAGTAAAACCAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTAGCAGAAGTGTTGGGGGTGGCAGTACAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGGGATGTAACCTTTCAAAACACAGCAGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCGCTCAGCCTTCTACCGTTGTGGCATGCTAGCCTACCAAGACACTCTCTACGTCCATTCGAACCGTCAGTTCTTCGTCAACTGCGTCGTTGCAGGCACAGTCGATTTCATCTTCGGAAACGCAGCAGTCGTATTCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAAGCAGCAGAACATGGTCACAGCACAAGGAAGAACTGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAAAATAAAAGCGACGTCGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGACCATGGAAGGAATATGCTAGGGTTGTGGTAATGCAAACGGACATAACCAATGTGATAGACTCAAAAGGGTGGGCGCCATGGGGTAGTGAAATAAAGAAACCCTACTTTGCGGAATATGATAATAATGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACACTTATTAATGCAGCTCAAGCTAAGACCTTTACGGCTGAACCATTCATAGATGGTGCTAATTGGCTCCCATCCACTGGCTTCCCCTATCAGCTTGGCCTCTAA 1716 44.52 MENTKLSLPLFAALLLTNAIVVLANSNENSDMNNNLSVIENSCAITLYPQLCQSTIYSIVGTSNLLSLKDIVEVSLSVAVDAAKHNYKNINKLWMSLNDVSKRDKIALRDCVETTDRAIYELHKAVEDLREYPNKKSLTLYADDLKTFLSSAITNQETCLEGLSHEKTEKRVLKLIESTHIHVTKLCSNTLALVKKLTHTHFTDQKTNKITSDHPTIVLFSHHVDQEEGENRGIREDLEDGIKWPEWMASRDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIRIKGGVYKENVDVPSSKTNIMFWGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDVTFQNTAGAANDQAVALRVGSDRSAFYRCGMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVFQNSDLTPRKPGPKQQNMVTAQGRTDPNQNTGIVIQKCKIKATSDLEPVIKEFPSFLGRPWKEYARVVVMQTDITNVIDSKGWAPWGSEIKKPYFAEYDNNGAGANTCCRVTWSTLINAAQAKTFTAEPFIDGANWLPSTGFPYQLGL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8866576 8871913 + CaPI482276_09g008590.1 Cam09g0859 135188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0859 571 Pfam Plant invertase/pectin methylesterase inhibitor 38 193 IPR006501 GO:0004857(InterPro)
Cam09g0859 571 SMART PMEI_2 34 193 IPR006501 GO:0004857(InterPro)
Cam09g0859 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 199 IPR035513 -
Cam09g0859 571 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Cam09g0859 571 Pfam Pectinesterase 265 556 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cam09g0859 571 FunFam Pectinesterase 35 198 - -
Cam09g0859 571 NCBIfam pectinesterase inhibitor domain 11 198 IPR006501 GO:0004857(InterPro)
Cam09g0859 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
Cam09g0859 571 PANTHER PECTINESTERASE 13 562 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cam09g0859 571 FunFam Pectinesterase 259 571 - -
Cam09g0859 571 CDD PMEI-like_3 42 198 - -
Cam09g0859 571 Gene3D - 259 571 IPR012334 -
Cam09g0859 571 MobiDBLite consensus disorder prediction 429 449 - -
Cam09g0859 571 SUPERFAMILY Pectin lyase-like 262 570 IPR011050 -
Cam09g0859 571 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0859 Cam-Chr9:8866576 Cam11g0016 Cam-Chr11:1730878 9.30E-92 dispersed
Cam09g0859 Cam-Chr9:8866576 Cam09g0139 Cam-Chr9:2188255 2.80E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0859 K01051 - csv:101221055 865.144