Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0906 ATGAATGATCTTGTGGAATTTCATTCTGAAGATTTGCATGCAGGGTTTGTAAATGAACAACAAGAAGAAATTATGGATCAAACACAGATCTGGCTTCATGATCAAAATCAACAACAACAAAATCATCAAAATTTTCTGTCTGATAATGATGATGATACTTTGATGTTCTACTCCGATTTCCCTCCACTGCCTGATTTTCCATGCATGTCGTCGTCTTCGTCGTCGTCGTCTACTCCTGCTCCGGTTAAAGCCACGGCTTCGTCCTCGTCGTCCTCCTCATCGTCCTCCGCCACTTCATGGGCAGTTTTGAAATCAGATGCTGATGAAATTACTGAAGAAATCAGAACAAATTATGATGCCAACAAATTATCATCGCCTCCGGTAGCGGAGACCGCGTTCACCGGGGGCGGGGATTGTACCGACGATATGATGATGGAGACGTTTGGATACATGGATTTACTCGAAGATAGTAACGAGTTTTTCGATCCGACGTGTATATTTCAAAACGAACAAGAACAACAACAAGAACAACGAGTAGTAGTAGAAGAAGATCAAGAGGGTTTGGAAGATTTGCAATTGGAGAGATTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAAAGTAAGGATAATGATGATGATAATGGAGGGAAACAAAACGACGTGGTTGAGGAAGAAGATATGGCAAAGGTTTTTTTGGAATGGCTTAGGAGTAATAGAGAAACAGTTTCTGCTGATGATTTGAGGAATGTTAGAATAAAAAAAGCCACCATCGAAAGCGCCGCCCGCCGACTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACAAATCACCTTCACAAGAGGAAATTCAAAGATCTCACTATTGAAACTGATACCCATTTCTTAGGGTTTCAAAATAACCCTAATTCCTCCTCCAACCTCCCTTGGATCCAAACCCCGCCCCCGTTACCGCCTCCGCCTTTGTATTCTCCTCCGATGCTCGGATATGTCCCGGCCACTGGCGGAGATGCGTATGGTGTTGGCCGTGGTTTCTCGGATCATTACGGCCAGTTACTTGACTCCTCCTTGTCCTGGAGTAATAATAGTAGTAGTAACAATAATAATAATTTCTCGGGACAGTTTGGACTACCCCCGTCGCATTTCAACTCCTTTGTTGATAATTTTGCGGCGGGGCCTCCCCTGCCACCGCCGCAACCACAAGGTTTTGCAACGGGGTATGGCGGAGGGCATCAATTCCCATATGTGGGTCAGTATTTTCAAGGGCAGGGTGGTAGTGGTGGCGCCGGTGGCGATAATGGTTTGGTTAGGTTGGATTCCTCAGCAACAAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTCTCTGCACATCATCGCCACCATCATGGTGGCCACCATGGCAACAGCCACCAAGATCAGCATCCCACTCAGATGAATCCTAATGCTTCAGATCATTGCAACATGGCTACAACTACTCAGCCCAATGCTGGTAACTGGGTCTACTGGCCGTCCCCCAGCGCAGCAGTGGCCTCTTCCGCCACATCGTCCGGATTTCCGGTGGACTCGCAGCCTGTACAAGCTGTTGATCGGCCTAATTCTTCCATGCAGAATCAGAACTACCCACCACGAATTCCATCTGACCGGCGGCTGGGATGGAAACCAGAGAAAAATTTGAAGTTTCTTTTACAGAAGGTTTTGAAACAAAGTGATGTGGGCAATTTGGGGAGAATTGTACTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCATTGCAATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCAGACGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCCGGGTCGAAACCCGAGAGCAGAAGGCCAGGAAAATCGCAAAGAAGCCATACGACTGCGGCTGCCAATGCGTCGTCACCTTCGCCAACGACCATCGCGACCCCGAAGAGACACTAA 2160 46.76 MNDLVEFHSEDLHAGFVNEQQEEIMDQTQIWLHDQNQQQQNHQNFLSDNDDDTLMFYSDFPPLPDFPCMSSSSSSSSTPAPVKATASSSSSSSSSSATSWAVLKSDADEITEEIRTNYDANKLSSPPVAETAFTGGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQEQQQEQRVVVEEDQEGLEDLQLERFEEVEMEDLMMMHGGESKDNDDDNGGKQNDVVEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDLTIETDTHFLGFQNNPNSSSNLPWIQTPPPLPPPPLYSPPMLGYVPATGGDAYGVGRGFSDHYGQLLDSSLSWSNNSSSNNNNNFSGQFGLPPSHFNSFVDNFAAGPPLPPPQPQGFATGYGGGHQFPYVGQYFQGQGGSGGAGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHHHGGHHGNSHQDQHPTQMNPNASDHCNMATTTQPNAGNWVYWPSPSAAVASSATSSGFPVDSQPVQAVDRPNSSMQNQNYPPRIPSDRRLGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPESRRPGKSQRSHTTAAANASSPSPTTIATPKRH 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9331855 9334870 - CaPI482276_09g009060.1 Cam09g0906 135235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0906 719 FunFam B3 domain-containing transcription factor FUS3 574 688 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 680 719 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 68 100 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 529 559 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 486 504 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 461 483 - -
Cam09g0906 719 MobiDBLite consensus disorder prediction 695 719 - -
Cam09g0906 719 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 231 687 IPR044800 GO:0003700(InterPro)
Cam09g0906 719 MobiDBLite consensus disorder prediction 454 504 - -
Cam09g0906 719 SUPERFAMILY DNA-binding pseudobarrel domain 577 673 IPR015300 -
Cam09g0906 719 SMART B3_2 578 680 IPR003340 GO:0003677(InterPro)
Cam09g0906 719 MobiDBLite consensus disorder prediction 529 565 - -
Cam09g0906 719 ProSiteProfiles B3 DNA-binding domain profile. 578 680 IPR003340 GO:0003677(InterPro)
Cam09g0906 719 CDD BfiI_C_EcoRII_N_B3 576 677 - -
Cam09g0906 719 Gene3D - 574 690 IPR015300 -
Cam09g0906 719 Pfam B3 DNA binding domain 579 675 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0837 Cam-Chr1:9448613 Cam09g0906 Cam-Chr9:9331855 2.10E-33 dispersed
Cam01g2370 Cam-Chr1:35702871 Cam09g0906 Cam-Chr9:9331855 8.50E-29 dispersed
Cam09g0906 Cam-Chr9:9331855 Cam10g2240 Cam-Chr10:35636016 9.90E-14 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52579 PF02362 B3 1.90E-17 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0906 K09287 - csv:101204282 1054.66