Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0937 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTCAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACCGGGTGGAGTACATTTGTTACATCGAAACGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAACGGATATGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTCCACCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACGAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGACAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGGCACCACCCTCTCCTTATTCTTCATCTGTCACATCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAAACCGACATTTCTCTCGGTTGCCGAATATTTGGAATCGATTTGAAAAATAACTCAAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGACGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGCTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGAGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTGGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.53 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQAPPSPYSSSVTSKPSSDLIQHDQLEKGNKTDISLGCRIFGIDLKNNSSIVSSLERKSCCPMTVANGAKDPVAAAAVTPPVVVGNLSQPSKEQLQASSELSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMAKRIFIYSSEEVKKMSRESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9621923 9625369 + CaPI482276_09g009370.1 Cam09g0937 135266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0937 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Cam09g0937 693 MobiDBLite consensus disorder prediction 670 693 - -
Cam09g0937 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Cam09g0937 693 ProSiteProfiles PB1 domain profile. 583 675 IPR053793 -
Cam09g0937 693 Gene3D - 122 227 IPR015300 -
Cam09g0937 693 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Cam09g0937 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cam09g0937 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Cam09g0937 693 MobiDBLite consensus disorder prediction 555 576 - -
Cam09g0937 693 Pfam AUX/IAA family 629 667 IPR033389 -
Cam09g0937 693 Pfam AUX/IAA family 563 619 IPR033389 -
Cam09g0937 693 MobiDBLite consensus disorder prediction 99 121 - -
Cam09g0937 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Cam09g0937 693 Gene3D - 287 358 - -
Cam09g0937 693 FunFam Auxin response factor 578 671 - -
Cam09g0937 693 FunFam Auxin response factor 286 357 - -
Cam09g0937 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam09g0937 693 FunFam Auxin response factor 123 227 - -
Cam09g0937 693 Gene3D - 579 671 - -
Cam09g0937 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0937 Cam-Chr9:9621923 Cam11g0143 Cam-Chr11:3109179 4.10E-17 dispersed
Cam01g0178 Cam-Chr1:2125532 Cam09g0937 Cam-Chr9:9621923 1.50E-201 transposed
Cam01g2396 Cam-Chr1:35898574 Cam09g0937 Cam-Chr9:9621923 3.00E-95 transposed
Cam02g2172 Cam-Chr2:34465835 Cam09g0937 Cam-Chr9:9621923 9.80E-125 transposed
Cam07g1412 Cam-Chr7:28640738 Cam09g0937 Cam-Chr9:9621923 8.00E-213 transposed
Cam11g0027 Cam-Chr11:1853117 Cam09g0937 Cam-Chr9:9621923 7.80E-178 transposed
Cam07g0135 Cam-Chr7:2524151 Cam09g0937 Cam-Chr9:9621923 8.20E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52581 PF02309 AUX_IAA 8.80E-06 CL0072 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0937 K14486 - csv:101205805 1248.03