Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam09g0953 | CTTAGGAATTTGTTGTTGCATCTTAACGATTTTACTGGTTACACTTGTCTTGGCAGTTGTCAGCATACTTCGTTTAGACCAATATGGGAGCATTTCTGTCTTCTAGTTGCAGCACCACTTCAGAAAAGACCAGGAAATTCCTTGTCTGAACTTAGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAACGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGTTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTGGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCGAACTATCGGGATGATTTGTCCACGGATGAGTGGAGACTCGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA | 2118 | 41.55 | LRNLLLHLNDFTGYTCLGSCQHTSFRPIWEHFCLLVAAPLQKRPGNSLSELSAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVADKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ | 705 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 9812246 | 9822938 | + | CaPI482276_09g009530.1 | Cam09g0953 | 135282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam09g0953 | 705 | Gene3D | - | 455 | 561 | IPR036925 | - | |
Cam09g0953 | 705 | Pfam | Elongation factor Tu GTP binding domain | 116 | 325 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | CDD | IF2_aeIF5B_IV | 576 | 671 | - | - | |
Cam09g0953 | 705 | FunFam | Eukaryotic translation initiation factor 5B | 455 | 561 | - | - | |
Cam09g0953 | 705 | Pfam | Translation-initiation factor 2 | 442 | 554 | IPR023115 | - | |
Cam09g0953 | 705 | FunFam | Eukaryotic translation initiation factor 5B | 568 | 705 | - | - | |
Cam09g0953 | 705 | Gene3D | Translation factors | 336 | 454 | - | - | |
Cam09g0953 | 705 | Gene3D | - | 108 | 335 | IPR027417 | - | |
Cam09g0953 | 705 | Pfam | Elongation factor Tu domain 2 | 352 | 427 | IPR004161 | GO:0005525(InterPro) | |
Cam09g0953 | 705 | Gene3D | Translation factors | 568 | 705 | - | - | |
Cam09g0953 | 705 | MobiDBLite | consensus disorder prediction | 71 | 99 | - | - | |
Cam09g0953 | 705 | NCBIfam | small GTP-binding protein domain | 118 | 244 | IPR005225 | GO:0005525(InterPro) | |
Cam09g0953 | 705 | FunFam | eukaryotic translation initiation factor 5B | 336 | 455 | - | - | |
Cam09g0953 | 705 | MobiDBLite | consensus disorder prediction | 60 | 109 | - | - | |
Cam09g0953 | 705 | SUPERFAMILY | Translation proteins | 572 | 704 | IPR009000 | - | |
Cam09g0953 | 705 | Pfam | Elongation factor Tu domain 4 | 575 | 648 | IPR029459 | - | |
Cam09g0953 | 705 | PRINTS | GTP-binding elongation factor signature | 181 | 191 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | PRINTS | GTP-binding elongation factor signature | 117 | 130 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | PRINTS | GTP-binding elongation factor signature | 233 | 242 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | PRINTS | GTP-binding elongation factor signature | 197 | 208 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 113 | 329 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Cam09g0953 | 705 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 113 | 404 | IPR027417 | - | |
Cam09g0953 | 705 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 56 | 704 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Cam09g0953 | 705 | CDD | IF2_eIF5B | 116 | 326 | - | - | |
Cam09g0953 | 705 | FunFam | Eukaryotic translation initiation factor 5B | 107 | 335 | - | - | |
Cam09g0953 | 705 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 438 | 567 | IPR036925 | - | |
Cam09g0953 | 705 | CDD | aeIF5B_II | 337 | 447 | - | - | |
Cam09g0953 | 705 | Coils | Coil | 550 | 570 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam09g0953 | Cam-Chr9:9812246 | Cam11g1651 | Cam-Chr11:29219702 | 5.80E-27 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam09g0953 | K03243 | - | csv:101204360 | 1243.41 |