Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0953 CTTAGGAATTTGTTGTTGCATCTTAACGATTTTACTGGTTACACTTGTCTTGGCAGTTGTCAGCATACTTCGTTTAGACCAATATGGGAGCATTTCTGTCTTCTAGTTGCAGCACCACTTCAGAAAAGACCAGGAAATTCCTTGTCTGAACTTAGTGCCAAGCTAGCTGCCCCTGCTCAAAAAGGTTTACCTTCTCAGTCTATAAAGTCACAAGATATTGAAAACAAAAAGAAGCAGGACGAGGTTGAGGTTGCCGACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAAAGCTTCAGTCCCAGATGCTACTCCTGTACCACAGGAAGAAAATCTTCGCTCGCCCATATGTTGTATTATGGGTCATGTTGATACTGGTAAAACCAAGCTGCTGGACTGTATCCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGGGAAAGAACTAGGGAATTGAAGGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCATGAGTCGTTTACAAACTTACGTTCTCGTGGTTCGGGCTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCCTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAATACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCAATTCTTAAGACAATGAAGCAGCAAACCAAGGATGTGCAGAACGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTACTATTATTGGTGCAGTGGGCCCAGAAAACTATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGTTGCATGAAGGAGATCAAATTGTTGTTTGTGGGATGCAGGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGGGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATTAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTCTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATAAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTGGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCTGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATATATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAGGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTTTTTCCTTGTGTTCTCAAAATTCTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTGATTGAGGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCTATTAAGATAGTTGGGCACTCTTCGGAGGAGCAACAAAAGATGTATGGTAGACACTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCGAACTATCGGGATGATTTGTCCACGGATGAGTGGAGACTCGTGGTGAAATTGAAGAATCTCTTCAAGATACAGTGA 2118 41.55 LRNLLLHLNDFTGYTCLGSCQHTSFRPIWEHFCLLVAAPLQKRPGNSLSELSAKLAAPAQKGLPSQSIKSQDIENKKKQDEVEVADKGKRKDDAVKKKASVPDATPVPQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQTKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVVKLKNLFKIQ 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9812246 9822938 + CaPI482276_09g009530.1 Cam09g0953 135282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0953 705 Gene3D - 455 561 IPR036925 -
Cam09g0953 705 Pfam Elongation factor Tu GTP binding domain 116 325 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 CDD IF2_aeIF5B_IV 576 671 - -
Cam09g0953 705 FunFam Eukaryotic translation initiation factor 5B 455 561 - -
Cam09g0953 705 Pfam Translation-initiation factor 2 442 554 IPR023115 -
Cam09g0953 705 FunFam Eukaryotic translation initiation factor 5B 568 705 - -
Cam09g0953 705 Gene3D Translation factors 336 454 - -
Cam09g0953 705 Gene3D - 108 335 IPR027417 -
Cam09g0953 705 Pfam Elongation factor Tu domain 2 352 427 IPR004161 GO:0005525(InterPro)
Cam09g0953 705 Gene3D Translation factors 568 705 - -
Cam09g0953 705 MobiDBLite consensus disorder prediction 71 99 - -
Cam09g0953 705 NCBIfam small GTP-binding protein domain 118 244 IPR005225 GO:0005525(InterPro)
Cam09g0953 705 FunFam eukaryotic translation initiation factor 5B 336 455 - -
Cam09g0953 705 MobiDBLite consensus disorder prediction 60 109 - -
Cam09g0953 705 SUPERFAMILY Translation proteins 572 704 IPR009000 -
Cam09g0953 705 Pfam Elongation factor Tu domain 4 575 648 IPR029459 -
Cam09g0953 705 PRINTS GTP-binding elongation factor signature 181 191 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 PRINTS GTP-binding elongation factor signature 117 130 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 PRINTS GTP-binding elongation factor signature 233 242 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 PRINTS GTP-binding elongation factor signature 197 208 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 113 329 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g0953 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 404 IPR027417 -
Cam09g0953 705 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 56 704 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Cam09g0953 705 CDD IF2_eIF5B 116 326 - -
Cam09g0953 705 FunFam Eukaryotic translation initiation factor 5B 107 335 - -
Cam09g0953 705 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 438 567 IPR036925 -
Cam09g0953 705 CDD aeIF5B_II 337 447 - -
Cam09g0953 705 Coils Coil 550 570 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0953 Cam-Chr9:9812246 Cam11g1651 Cam-Chr11:29219702 5.80E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0953 K03243 - csv:101204360 1243.41