Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0964 ATGTCGAGCACTCTTGGTCAAGTCATCAAATGCAAAGCTGCTGTGGCATGGGAGGCTGGAAAGCCACTGGTTATTGAGGAAGTGGAAGTAGCACCACCACAAGCTAATGAAGTCCGTGTCAAAATCCTCTTCACTGCTCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAAGGCCAAACACCTCTCTTTCCTCGCATATTTGGACATGAAGCCGGAGGAATTGTGGAGAGTGTAGGAGAGGGTGTGACAGATCTTCAGCCAGGAGACCATGTTCTTCCTGTATTCACTGGTGAATGCGGGGATTGTCGCCATTGTCGATCGGAAGAGAGCAACATGTGTGATCTTCTCCGAATCAACACCGACCGTGGTGTTATGATCAATGATGGCAAGTCAAGGTTCTCTATAAATGGACAGCCAATCCACCACTTTGTTGGTACCTCGACGTTTAGCGAATACACTGTTGTTCATGTTGGCTGTCTGGCCAAGATCAACCCGGCTGCGCCTCTTGACAAAGTTTGTATTCTTAGCTGTGGCATATCCACAGGGCTTGGTGCCACTTTGAATGTTGCAAAGCCAAAAAAGGGTTCATGTGTTGCGATCTTTGGACTTGGAGCTGTTGGCCTTGCAGCTGCTGAAGGAGCAAGAATTGCTGGCGCATCCAGGATCATTGGTGTTGATCTGAATCCAAGTAGATTCGAAGAAGCGAAGAAATTTGGTTGCAACGAGTTTGTGAATCCAAAGGATCACAAGAAGCCTGTTCAGGAGGTGATTGCGGAGATGACCGATGGAGGAGTGGACCGGAGTGTGGAATGCACCGGAAGCATTCAGGCAATGATCTCAGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCGGTACTGGTGGGAGTGCCGAACAAAGACGATGCATTCAAAACTCATCCAATGAATCTCCTGAATGAGAGGACTCTGAAGGGTACCTTCTTTGGAAACTACAAACCGCGAACCGACATTCCCGGGGTGGTGGAACAGTACTTGAAGAAGGAGCTGGAATTGGAGAAGTTCATAACACATTCAGTCCCATTTTCTGAGATAAACAAAGCATTTGATTACATGCTGAAGGGGGAATCAATCCGTTGTATTATAAGGATGGGAGAGTGA 1143 47.59 MSSTLGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECGDCRHCRSEESNMCDLLRINTDRGVMINDGKSRFSINGQPIHHFVGTSTFSEYTVVHVGCLAKINPAAPLDKVCILSCGISTGLGATLNVAKPKKGSCVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGCNEFVNPKDHKKPVQEVIAEMTDGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRTDIPGVVEQYLKKELELEKFITHSVPFSEINKAFDYMLKGESIRCIIRMGE 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9994466 9997022 - CaPI482276_09g009640.1 Cam09g0964 135293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0964 380 Gene3D - 19 370 - -
Cam09g0964 380 PANTHER ALCOHOL DEHYDROGENASE 7 376 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Cam09g0964 380 Pfam Zinc-binding dehydrogenase 206 337 IPR013149 -
Cam09g0964 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Cam09g0964 380 Gene3D - 183 321 - -
Cam09g0964 380 Pfam Alcohol dehydrogenase GroES-like domain 35 164 IPR013154 -
Cam09g0964 380 FunFam alcohol dehydrogenase 1-like isoform X1 19 182 - -
Cam09g0964 380 CDD alcohol_DH_plants 9 377 - -
Cam09g0964 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Cam09g0964 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Cam09g0964 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Cam09g0964 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0964 K18857 - - csv:101209854 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0091 Cam-Chr6:2788900 Cam09g0964 Cam-Chr9:9994466 4.80E-137 dispersed
Cam09g0963 Cam-Chr9:9978257 Cam09g0964 Cam-Chr9:9994466 1.70E-214 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g654 . . . . . . . . Cmo08g00048 . . . . . . . . . . . . . . . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . . . Lsi02g02008 Csa07g01409 . . . . . . . . . . . . . Cma08g00048 . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89