Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0977 ATGGCAGATCTTGTTAGCTACGGGAATGCCAACCGTGACACTGAGCAGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCTAATGATGAGTCATCTTTAATTTGGATTTCAACTACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCTGTGTTCCAACGATATCTACGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGGTCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGCTGAAATTTGGATAGCGGGTCTGAAAGCATTAGTTGGTTCTGGTGATGGTGGGCGTTCTAAGATTGATGGATGGAATGATGGAGGCCTCTATCAAGATGACAACAGTGACTTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTACTTTTAGTCCAAACAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAACCAGACAAATATGCAAGCTAAAGGATCTAGTTCAGATATTTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACGCCAGATGACTGTGATGCTCTAGGAGATATATACATATGGGGTGAGGTTATTAGTGATAATTTTATGAAGCCTGGGGCTGATAGAGCTATTAGTGTGAGCTCAAGGACAGATGTGCTACTTCCAAAGCCATTAGAGTCCAATATTGTTCTAGATGCACAACATATAGCCTGTGGTGTCAGGCATTCTGCGATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGTGAGGAATCTGGAGGAAGGCTTGGCCTGGGAATGGGGAAAGATGTAACACAACCTCGCCTTGTTGAAGCCTTGGCAGCTACTACAGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAGCTTTACACATGGGGAGATGGTGTACATAATGCTGGGCTTCTTGGTAATGGAACTGATGTCAGCCATTGGATGCCAAAGAGAATCTCAGGTATTCTTGAGGGGCTTCAAGTTGCATTTGTAGCATGTGGTCCGTGGCATACAGCGTTGATCTCATCTATGGGGCAACTATTCACCTTTGGCGATGGTACTTTTGGGGTTTTGGGTCATGGTGATAAAAAAAGCATTTCATATCCGAGAGAAGTGGAGTCCTTAACTGGCTTGAGGACAATTGCTGTTGCATGCGGAGTGTGGCATACCGCTGCTGTGGTAGAAGTAATGACACAATCTAGTACAAGCATCTCATCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAGGGAACCCCGGCTTAAACCCACATGTGTTCCAGCACTAATTGACTACAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAACTTGGAAATCCCCTTGCTGATGGAAAGCAACCATGCTTGGTGGAAGATAAGCTTTCCGGGGAGTGTGCTGAAGAGGTTGCTTGTGGTGCGTATCATGTGATGGTACTTACCTCCAAAAATGAAGTTTATACATGGGGAAAAGGTGCAAATGGGAGGTTAGGCCATGGAGACGTTGAGGATCGGAAATCACCAACTTTGGTTGAATCTTTGAAGGATAAACATGTCAAAATCATTGCTTCTGGATCTAACTACTCCGCAGCTATTTGTCTACACAAATCATTGTCAGGCACAGAGCAGTCACAATGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCGTGTAGTTCCAAAAAAGCATTAAGAGCTGCCCTGGCTCCTACTCCTAGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCAGAATCTGGAAGTAATTACCGGAAAAATGCTGTTCCCCGCCTGTCAGGTGAGAACAGGGACAAGCTGGACAAGAGTGACACAAGACCTCCTAAAACAGCACTTTCAAATATGGATCTGATAAAACAACTCGATAGCAAAGCAGCAAAGCAAGGGAAGAGAACAGATACATTCTCCATTGCTCGCCCCACTCAAGCACATACTCTTCTTCAACTCAAAGATGGTCCAAATACTGTTGATATTCGGCGACTAGCTCCCAAGCCAATTCCTATGGCTAATGGAGTAAATTCCAGATCTGTGTCACCTTTGTCAAGGAGATCTAGTCCGCCAAGGTCTGCTACACCTGTGCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCGGATAGCTTGAAGAAAACAAACGAACTCTTAAATCAAGAGGTTCTAATGCTGCGTGCACAGGTTGAGAGCCTGAGGAAGAGATGTGAACTTCAAGAATTAGAACTTCGGAAGTCAGAGAAGGAAGCACAAGAAGCCATTGCATTGGCTGCAGAGGAATCTGCTAAATCCAAAGCGGCAAAAGAAGTTATTACATCACTAACTGCTCAGATTAAACATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGTCTTCCTGGAATTAATGACTCTGAAAACATGAGACCATTGTATGTTCCGAATGGTATGGAGCAAAATGGTGCCCACCATTTAGCTTCCAATGGAGAGCGTCTTTCAGAATCAGATTCACACAGCTCCTTGTCCTTGGCTTCTTCAGTTGCAACTGATTATTCCTTGAGTAACGGAATTCAAGGTCTAGCTAATGCATCTGGAGAGTTCCCTGCAAGTAATGAAACTAACTCAGCCTCAGAGCCAGGGCGATTTACCTCTGATGGGACAGATGATGATCCAGATGTAAGACTCTCTTATGGTCATAGAGGTGTTTGGGAAAGCCGCCGCAGTAGCAGCATGTCAGAAGGAGCGGATAACTCGGGTCCATTACTAGACAGTGAGAGTAACACAAGATCAAGAAGTTCTGCATTGCCAGGAAATGACAATCAAGTTGAGGCTGAATGGATTGAGCAATATGAACCTGGTGTCTACATAACTTTGACGGCACTTCGTAATGGGACTAGAGATCTTAAACGAGTGCGCTTCAGTCGGAGGCGATTTGGGGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGTGATAAAGTCTACGAGAAATATAATGTTCGTGGAACCGAAAAATCCTCAATTTCTCCAAGTCCTCCATGA 3351 43.99 MADLVSYGNANRDTEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEIWIAGLKALVGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSSNSVTRDISSPEVCVTFSPNKSPTSVRSENSTRSHVPLNQTNMQAKGSSSDIFRVSVSSAPSSSSHGSTPDDCDALGDIYIWGEVISDNFMKPGADRAISVSSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTQPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGVHNAGLLGNGTDVSHWMPKRISGILEGLQVAFVACGPWHTALISSMGQLFTFGDGTFGVLGHGDKKSISYPREVESLTGLRTIAVACGVWHTAAVVEVMTQSSTSISSGKLFTWGDGDKNRLGHGDREPRLKPTCVPALIDYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPLADGKQPCLVEDKLSGECAEEVACGAYHVMVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVESLKDKHVKIIASGSNYSAAICLHKSLSGTEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGSNYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIARPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRRSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQELELRKSEKEAQEAIALAAEESAKSKAAKEVITSLTAQIKHMAERLPDGVKMGLPGINDSENMRPLYVPNGMEQNGAHHLASNGERLSESDSHSSLSLASSVATDYSLSNGIQGLANASGEFPASNETNSASEPGRFTSDGTDDDPDVRLSYGHRGVWESRRSSSMSEGADNSGPLLDSESNTRSRSSALPGNDNQVEAEWIEQYEPGVYITLTALRNGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISPSPP 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10103637 10110087 - CaPI482276_09g009770.1 Cam09g0977 135306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0977 1116 MobiDBLite consensus disorder prediction 966 1040 - -
Cam09g0977 1116 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Cam09g0977 1116 Pfam Transcription factor BRX N-terminal domain 868 898 IPR027988 -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Cam09g0977 1116 Gene3D - 12 127 IPR011993 -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 1006 1040 - -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 143 207 - -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 919 941 - -
Cam09g0977 1116 FunFam PH, RCC1 and FYVE domains-containing protein 1 205 454 - -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 464 515 IPR000408 -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 966 985 - -
Cam09g0977 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 568 619 IPR000408 -
Cam09g0977 1116 Pfam FYVE zinc finger 626 686 IPR000306 GO:0046872(InterPro)
Cam09g0977 1116 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 693 728 - -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 346 398 IPR000408 -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 569 616 IPR000408 -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 463 511 IPR000408 -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 515 564 IPR000408 -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 294 343 IPR000408 -
Cam09g0977 1116 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Cam09g0977 1116 CDD PH_PLC_plant-like 12 123 - -
Cam09g0977 1116 Gene3D - 458 623 IPR009091 -
Cam09g0977 1116 SMART fyve_4 618 687 IPR000306 GO:0046872(InterPro)
Cam09g0977 1116 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 624 686 IPR017455 -
Cam09g0977 1116 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 156 1076 IPR051210 -
Cam09g0977 1116 SUPERFAMILY RCC1/BLIP-II 233 620 IPR009091 -
Cam09g0977 1116 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 769 812 - -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Cam09g0977 1116 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 516 567 IPR000408 -
Cam09g0977 1116 SUPERFAMILY FYVE/PHD zinc finger 624 694 IPR011011 -
Cam09g0977 1116 Coils Coil 817 872 - -
Cam09g0977 1116 Gene3D - 358 457 IPR009091 -
Cam09g0977 1116 Gene3D - 172 357 IPR009091 -
Cam09g0977 1116 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Cam09g0977 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 697 IPR013083 -
Cam09g0977 1116 SUPERFAMILY PH domain-like 13 123 - -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 505 523 IPR000408 -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Cam09g0977 1116 PRINTS Chromosome condensation regulator RCC1 signature 563 584 IPR000408 -
Cam09g0977 1116 CDD FYVE_like_SF 629 682 - -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 986 1004 - -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 782 812 - -
Cam09g0977 1116 FunFam PH, RCC1 and FYVE domains-containing protein 1 455 625 - -
Cam09g0977 1116 MobiDBLite consensus disorder prediction 702 717 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0977 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0123 Cam-Chr4:3630822 Cam09g0977 Cam-Chr9:10103637 3.20E-34 dispersed
Cam08g1107 Cam-Chr8:17453704 Cam09g0977 Cam-Chr9:10103637 0.00E+00 dispersed
Cam09g0977 Cam-Chr9:10103637 Cam10g1309 Cam-Chr10:26557093 1.5e-311 dispersed
Cam09g0977 Cam-Chr9:10103637 Cam09g0084 Cam-Chr9:1696885 8.10E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83