Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g0999 ATGAAGAAACCAAATCAGGTATTTAGAACAACAACCCTCACTGCAGCACCAAAATTGGATACCCTTAATTTCCACAACTCCAATGTCGATTCTGTAGTAGCTTTAATCGGCAATCGCAATCCCTCTCATTTCCGCACTGTGGACATGGATGCTAAGTTCGATACTTCATCTTCTGCTTCTAAAACTGTGGACGATCTTTGGAAGGAGTTGAAGGAGGAGGCTGTTGGAGAGATGATATTGGAGGGTTTTCTTCAAGCCAAACCACAGGATCAGGATGTGAGGATTTTGAATCCGTTTAGTTGTTTAAAGGATTTCGATAGGGTTTATGTTGAAGAAGAGACTGTTGGGTTTGGGAATGGAGTTGACATTAGTGGGAGAGGGAAGAGAAGGCGCGCAGCTATGGAACCAATGGATGAAGCTGCACTGCAAAGACAACGGAGGATGATTAAGAACAGGGAGTCTGCTGCTAGGTCCAGAGAAAGGAAACAAGCACATCAAGTTGAGTTAGAGTTAATAGCTTCGAGACTTGAGGAAGAGAACGAGCTATTATTGAAAGAGAAGGCCGAGAGATCTAAGGAACGACTAAAGCAGTTGTGGAGAAACAAAGACTGCCACGTGTCATATGCTGGGGTCACTCCTTCGAGTGGTAGCCTTTCTATCATTCTTGAGACAGGAGAAGCGAAGGAGCATTTTGAACTAAAGATCAACCCAACAAGAGATGATGATCCTTCCTCGACCTTTGAACTTCAGTTGGCCAAAGGCACTGCCACTCCTTTTTTCTGCTCTAATGAAACCAATTCCATGTTCATTCTCACTGCCAAACTCACAGGCTTTGCAGCAGATGACATTGTGATAACTATTAATGGAAGTGGTACTCGGATTGAGATTGGCTGGGGAAAACTTGTTCGGAAAGTGGAGATTACAGGAAGGACGTACAAGAAAGAAACAGAGACAAGGAGGTTCAAGAAGATTTTTCGAATTCCGGATGGTGTGGTTTTGGACGAAATCAAGGCGACGTATAATGACAAAGAATCAGTTTTGAAGATTTCGATGCCGAAATTGGTGGACGGAATGCTTGGGGTAGGAATTGAAGAAGTGAAGGAACAGGAAGCTGGTGAAGCCACATTCGGATCTCAGGATTATCAAGAAGAGCTGCTTGAGACTCTGGAAACTGGCAGAAAGACCAATTTGGTTGATGATAATCATGAAAAGGAGGATGACAATGCTGCTAATGAAGAAGTTGAAGAAGAAAATGTCGGGCCCGAAGCATTTCACGAGAGAGAATATGTAGCAGAAATGCCGCCAGAAGAGATCAAGAAGTTGAAGGGCAATGAGATGGATCAAGATATTGATGGAGAATCCAATGACGACTACTCTGAAAGGAAACAGACAGTAAAAGTAGCAACAAAAACTACGGAGTATGAGGCCACAAGAGAAAATGTTAATGGAGAAATCAAGGTTCCCAAGGTTAGGAGTAAGGAAGGGATAGATGTGGCTGAAGGAACAGCCAACCATCAAAAAGAAAAACGACTCGATGCTGGAGCATGTGATGGTGATAAAGCAACCCTGATAAATAAGACACCATATGTCAAGACACAATCAAAAGCTTCTATGGATCGAGAGGCACAAGTATTAGACCGTGAACTTTCGCAGCCAAATCGACTGACTCAAGCAGAACCAGGGACGCAGGAAACATACAATAACATTTGGGAATTGAAAGAGCTTGAAACAGATAAAGGAAGTCCATATTTGCAAAGCCCTGCACATCAGCACGAAGGAAGAGGAGTTGATCAAAAAGGAAGTTCCCAAACAAAAGATGAAATTAAGGACGCAGGAGAAGAATGCAAGTCAACACATGAAGATTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGTACTCCAATCATCATTGCGGGGTCAGCGCTTCTCGCATCCCTTGCAATTGTTGTGTTTAACTTAATGAAAAGTAAAAGACGAGAGAAAAATATAAGAGGGGCTTCAATTTTCCAGCAGCCAGCAGCCAGGAACGGGAATCGACTTAAGCACATGGCGCTCTCTCCTTCTGCTGACACAAACATTGTTTTAGTTTTCACATGGCATGGATCCAGAGACTGA 2139 42.96 MKKPNQVFRTTTLTAAPKLDTLNFHNSNVDSVVALIGNRNPSHFRTVDMDAKFDTSSSASKTVDDLWKELKEEAVGEMILEGFLQAKPQDQDVRILNPFSCLKDFDRVYVEEETVGFGNGVDISGRGKRRRAAMEPMDEAALQRQRRMIKNRESAARSRERKQAHQVELELIASRLEEENELLLKEKAERSKERLKQLWRNKDCHVSYAGVTPSSGSLSIILETGEAKEHFELKINPTRDDDPSSTFELQLAKGTATPFFCSNETNSMFILTAKLTGFAADDIVITINGSGTRIEIGWGKLVRKVEITGRTYKKETETRRFKKIFRIPDGVVLDEIKATYNDKESVLKISMPKLVDGMLGVGIEEVKEQEAGEATFGSQDYQEELLETLETGRKTNLVDDNHEKEDDNAANEEVEEENVGPEAFHEREYVAEMPPEEIKKLKGNEMDQDIDGESNDDYSERKQTVKVATKTTEYEATRENVNGEIKVPKVRSKEGIDVAEGTANHQKEKRLDAGACDGDKATLINKTPYVKTQSKASMDREAQVLDRELSQPNRLTQAEPGTQETYNNIWELKELETDKGSPYLQSPAHQHEGRGVDQKGSSQTKDEIKDAGEECKSTHEDSSKEAKQEKKQDSKQFKMRTPIIIAGSALLASLAIVVFNLMKSKRREKNIRGASIFQQPAARNGNRLKHMALSPSADTNIVLVFTWHGSRD 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10371803 10380006 + CaPI482276_09g009990.1 Cam09g0999 135328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g0999 712 Gene3D - 142 198 - -
Cam09g0999 712 Coils Coil 166 193 - -
Cam09g0999 712 MobiDBLite consensus disorder prediction 449 470 - -
Cam09g0999 712 MobiDBLite consensus disorder prediction 531 565 - -
Cam09g0999 712 MobiDBLite consensus disorder prediction 449 468 - -
Cam09g0999 712 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 193 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0999 712 SMART brlzneu 139 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0999 712 SUPERFAMILY Leucine zipper domain 143 193 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0999 712 Gene3D - 227 357 IPR008978 -
Cam09g0999 712 MobiDBLite consensus disorder prediction 580 636 - -
Cam09g0999 712 Pfam Hsp20/alpha crystallin family 264 354 IPR002068 -
Cam09g0999 712 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 23 199 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cam09g0999 712 MobiDBLite consensus disorder prediction 592 636 - -
Cam09g0999 712 CDD ACD_sHsps-like 263 353 - -
Cam09g0999 712 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 250 369 IPR002068 -
Cam09g0999 712 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 146 161 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0999 712 CDD bZIP_plant_BZIP46 143 171 - -
Cam09g0999 712 MobiDBLite consensus disorder prediction 397 422 - -
Cam09g0999 712 Pfam bZIP transcription factor 139 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g0999 712 SUPERFAMILY HSP20-like chaperones 246 354 IPR008978 -
Cam09g0999 712 MobiDBLite consensus disorder prediction 549 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g0999 K14432 - - rcu:8287537 150.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam09g0999 Cam-Chr9:10371803 Cam09g1472 Cam-Chr9:23474882 4.80E-13 dispersed
Cam09g0999 Cam-Chr9:10371803 Cam10g1865 Cam-Chr10:32699776 9.50E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52586 PF00011 HSP20 3.70E-07 CL0190 Cam TF