Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1003 TGCACTTGCTCTTTCTATTTACAGGTTCAGTGTTCTGCATATGTTGAGTACTTGGGTCAGTTTACATCAGAACGGTTCTCAGAGGACATTGCTGAGCTGATTCGGAGCCGTTACCAATCAAAGGAAAAGCGCCTCTTCGATGATGTTTTAGCTTTGTTTGTTCTTCATCATCCCGAGAATGGGCATGCGATTATTCTTCCAATAATTTCTTGTATAATTGATGGCACCCTGGAATATAACAGAAATGACCCTCCATTTGCCTCTTTTATATCCTTATTCTGCCCTGGCACTGAGAACGATTACTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTGCGGATCTTGACTCATTACAATCGTCCGATATACAAGATGGAACGAAAAAATGGTGAAACAGAAAGAAGCAGTAATGGTGAAACAGAAAGAAGCAATAATGGCAGCCTTTCCACAACAAGTGACACTGATGATGGGGAATTTTTTCGAGTGCCTCAGCAACAAGAGAGGAAACCTGTACGACCTTTGTCCCCATGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGGTGCAGTGGTGTAATGGGTAAATATGCTGCTGGAGAACTCAGGCCACCCACATCAGCTTCTTCTCGTGGATCTGGTAAACACCCTCAGCTTATGCCATCAACTCCAAGGTGGGCTGTTGCAAATGGTGCTGGAGTCATATTGAGTGTTTGTGATGAAGAAGTTGCTCGGTATGAGACTGCAACTCTAACAGCAGCTGCTGTTCCTGCGCTTCTTCTTCCTCCCCCCACAACAGCTTTGGATGAACATTTAGTTGCTGGGCTACCAGCTCTTGAGCCGTATGCACGCTTATTTCATAGATATTATGCCATTGCTACTCCCAGTGCCACCCAAAGGCTTCTTCTTGGGCTCTTAGAAGCACCTCCATCTTGGGCTCCAGATGCACTTGATGCAGCTGTACAGCTTGTAGAACTACTTCGAGCTGCTGAAGAGTATGCAACTGGCATCAGGCTTCCTAGGAACTGGATGCATTTGCATTTCTTGCGTGCCATTGGTACTGCAATGTCCATGAGAGCTGGTATTGCTGCTGATGCTGCAGCAGCCTTGCTTTTTCGCATACTGTCCCAACCTGCATTGCTCTTTCCGCCACTACGACAAGTTGAGGAAACTGATGTTCAGTGTGAATCTTTGGGTGGCTATGATTCATCATACAGGGAGCAGATTGAAGTGCCTGCAGCGGAAGCTACAATTGACGCTACTGCACAAGGCATTGCATCCATGCTTTGTGCACATGGTCCTGAAGTTGAATGGAGAATTTGTACAATCTGGGAAGCTGCTTATGGCTTGATTCCATTAAGTTCTGATGTAGTTGACCTTCCTGACATCATAGTTGCAACGCCATTGCAGCCTCCCATATTATCATGGAATTTATACATTCCTCTCCTTAAGGTTCTCGAATATCTTCCACGCGGTAGCCCATCTGAAGCATGTTTGATGAAGATATTCGTTGCTACTGTTGAATCTATTCTTCAAAGAACATATCCTTCTGAGTCTTCCAGAGAACAATATAGGAAAACAAGATATTTTTCCAGCCTTGGTTCTGCTTCTAAAAATCTCGCTGTCACAGAGCTTCGGACCATGGTCCACTCGCTTTTCTTAGAATCGTGTGCTTCTGTGGAGCTTGCTTCACGCCTACTTTTTGTTGTATTGACTGTTTGTGTTAGTCATGAAGCTCAATCCAATGGTAGCAAGAAATTGAAACGTGAACAAAGTAATCTTCTGGATGAAAGGATTGAGGACTTGCAAGCAATACCCGAGAACCATAAAGGACTGAGGAGAAAGACTAAAAAGCAAGGTCCTGTTTCTGCATTTGATTCTTATGTCCTGGCTGCTGTTTGTGCTCTTGCCTGTGAGGTCCAATTATTTCCCTTTGTTGCTAGGGGAAGTGATCATTTAAATACTACAGATTTACAGGATGTAATAAAACTGGTCAAAGGAAATGGTACTTCAACCGAGCTTCAAAATAGTGTTGGCTCAGCAGTATGCCACACTCACCGAATTTTGGCCATCTTAGAAGCACTTTTTTCTTTAAAGCCATCTTCTGTGGGAACTTCATGGAGTTATAGTTCAAATGAGATAGTTGCTGCAGCAATGGTTGCAGCTCATATTTCAGAACTCTTTAGACGATCAAAGGCTTGCATGCATGCTCTCTCTATCCTGATGCGATGCAAGTGGGACGATGAAATCTACAACAGGGCATCATCATTGTACAACCTAATAGATATTCACAGCAAAGCCGTTGCTTCCATTGTTAATGAGGCTGAACCTTTAGAAGCACATTTAATACAAGTACCGAAATGGAAGGAATCTTTCATTGGGTTAAATGGAAAAAAACAAATTCGATATGAAGACAGTACCTGCTTTCATCCTGGACAATCATCTGTCCAAAAGTGTGATAATTCATCCCATTCAGAAACTAAAATTGTGTTTGAGCGAGCATCACATTCAAATGAAGAGTTGGGTAACAGTTCAGAGAAAGGTTTAGCAAGCTTCTCAATCGATGCTTCTGATTTAGCCAACTTACTCACAACGGACAGGCATATAGGATTCAACTGTTGTGCACAAGTTCTATTAAGATCAGTGCTCGCTGAGAAACAAGCATTATGTTTTTCTGTTATTTCTCTACTTTGGCACAAACTGATTTCTGCTCCTGAAACTCAACCTAGCATGGAGAGCACTTCGGCCCAGCAAGGATGGAGGCAGGTAGTTGATGCATTATGCAACGTGGTATCAGCTTCCCCAGCTAAAGCGGCTACAGCAATTGTTCTTCAGGCCGAGAGGGAGTTGCAACCTTGGATTGCAAAAGATGATGATCAAGGTCAGAAGATGTGGAGAATCAACCAGCGGATCATCAAATTGATAGTTGAGCTAATGAGAAATCATGATACTCCAGAATCACTGGTCGTATTGGCGAGTGCGTCAGATCTCCTGTTGCGTGCCACAGATGGGATGCTTGTAGATGGAGAAGCCTGTACGTTGCCACAACTAGAGCTGTTGGAAGTGACTGCTAGAGCAGTTAAGCCTGTACTGGAGTGGGGACAATCTGGACTGTCCATTGCTGATGGCCTTTCCAATCTCTTAAAGTGTCGTCTACCAGCTACTGTTCGATGCCTTTCTCATCCAAGTGCGCATGTCCGAGCTTTAAGCACATCAGTTCTTCGTGATATTCTGCACACCAGTTCAATAAAGTCTAGTTCAAAATCGGTTAACATAAATGGCATCTATCCCTCTTATCAGTATTTCAGTTCAGGTATCATTGACTGGAAAGCAGATATTGAGAAGTGCATGGGATGGGAAGTTCGTAGTCAACTTGCAACTAGACAATCAACTCAGTTTCTTCAAGCTGCTGCCAAGGAATTAGGCTGCTCTATTTCCCGATGA 3468 43.66 CTCSFYLQVQCSAYVEYLGQFTSERFSEDIAELIRSRYQSKEKRLFDDVLALFVLHHPENGHAIILPIISCIIDGTLEYNRNDPPFASFISLFCPGTENDYSEQWALACGEILRILTHYNRPIYKMERKNGETERSSNGETERSNNGSLSTTSDTDDGEFFRVPQQQERKPVRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELRPPTSASSRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVEETDVQCESLGGYDSSYREQIEVPAAEATIDATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSDVVDLPDIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVESILQRTYPSESSREQYRKTRYFSSLGSASKNLAVTELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAQSNGSKKLKREQSNLLDERIEDLQAIPENHKGLRRKTKKQGPVSAFDSYVLAAVCALACEVQLFPFVARGSDHLNTTDLQDVIKLVKGNGTSTELQNSVGSAVCHTHRILAILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHISELFRRSKACMHALSILMRCKWDDEIYNRASSLYNLIDIHSKAVASIVNEAEPLEAHLIQVPKWKESFIGLNGKKQIRYEDSTCFHPGQSSVQKCDNSSHSETKIVFERASHSNEELGNSSEKGLASFSIDASDLANLLTTDRHIGFNCCAQVLLRSVLAEKQALCFSVISLLWHKLISAPETQPSMESTSAQQGWRQVVDALCNVVSASPAKAATAIVLQAERELQPWIAKDDDQGQKMWRINQRIIKLIVELMRNHDTPESLVVLASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVKPVLEWGQSGLSIADGLSNLLKCRLPATVRCLSHPSAHVRALSTSVLRDILHTSSIKSSSKSVNINGIYPSYQYFSSGIIDWKADIEKCMGWEVRSQLATRQSTQFLQAAAKELGCSISR 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10426438 10447245 - CaPI482276_09g010030.1 Cam09g1003 135332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 263 281 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 101 125 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 331 351 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 363 385 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 189 207 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 236 257 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 495 516 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 218 236 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 312 331 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 435 458 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 PRINTS Protein GIGANTEA signature 287 307 IPR026211 GO:2000028(InterPro)
Cam09g1003 1155 MobiDBLite consensus disorder prediction 140 160 - -
Cam09g1003 1155 MobiDBLite consensus disorder prediction 127 169 - -
Cam09g1003 1155 MobiDBLite consensus disorder prediction 209 231 - -
Cam09g1003 1155 PANTHER PROTEIN GIGANTEA 8 1154 IPR026211 GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0042752(PANTHER)|GO:0048586(PANTHER)|GO:2000028(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1003 K12124 - - csv:101216952 2080.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g1176 Cam-Chr8:18106796 Cam09g1003 Cam-Chr9:10426438 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77