Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1013 ATGAGATCCAGCGAAACCAGTTTGGAGGGCGAACGGCGAATGCGACCTGCGCCGGCGCGAATGACGACTGAGAGAGAGATTGGAATGAGAATGCGAGTGAAAAAGGTGAAAACGGAACCCAGTACTACGCAATCCATGACCACCCATGAGCCTTCCATCTCCCCCAATGATAACCTGAAAGGTTTCCTTCTTGCTATGCTGTCCAGCGCCTTTATTGGCTCCAGCTTCATCATCAAGAAGTTGGGTCTTCGTCGGGCTGGTGCTTCGGGTTCTCGAGCGAGTTCTGGTGGATATGGGTATCTATTAGAGCCCCTTTGGTGGATCGGCATGATTACCATGATTGTTGGAGAATTTTCCAATTTTGTGGCTTATATTTATGCTCCTGCCATTCTCGTGACACCACTTGGAGCAATAAGTATAATTGTTAGTGCTGTACTTGCACATTTTTTCTTGAAGGAAAAATTGCAGAAAATGGGTGTATTGGGGTGTGTTTTATGTGTTGTAGGGTCTACAATGATTGTGCTCCATGCACCTGGTGAACGTACTCCGAGTTCAGTGGATGAGATATGGGAACTAGCGACTCAACCAACTTTCCTTCTCTATACGGCCTCAGTAGTAGCTATTGTGTTGTTCCTGGTGTTGTATTGCGAACCCCGCTATGGACAGACAAACATACTCATTTATGTTGGGATATGTTCCATAATTGGATCCTTGACGGTAATGAGCATCAAAGCTATTGGCATTGCAATAAAACTCACAATGGAGGGTTGGAGTCAGGTTGCTCACTTCCAAACATGGGTCTTTGTAATGGTCGCAATCTCATGCATAATTATTCAGTTGAATTATTTAAATAAGGCTTTGGACACATTTGACACTGCAGTTGTTTCGCCAATTCATTATGCAATGTTCACATCTTTCACGATCTTCGCCAGTGTCATAATGTTCAAGGATTGGTCTGGTCAGAGTGCTAGCAGCATTGCATCAGAACTCTGTGGATTTGTAACCATACTTTCTGGGACCGTGGTCTTGCATGATACAAGATCACCTGATCCTGCTTCTGTTTCAGAGATGTACATGTCTGTCTCTCCTCAAGTGTCGTGGTATTTCCCCGCAAATGGCGATACCTGGAAACGGAAATCTGAAGAAATACTATTGCCAGATTTTGATGCAATCCTCAAACAAGATCATTTCACATGA 1197 44.28 MRSSETSLEGERRMRPAPARMTTEREIGMRMRVKKVKTEPSTTQSMTTHEPSISPNDNLKGFLLAMLSSAFIGSSFIIKKLGLRRAGASGSRASSGGYGYLLEPLWWIGMITMIVGEFSNFVAYIYAPAILVTPLGAISIIVSAVLAHFFLKEKLQKMGVLGCVLCVVGSTMIVLHAPGERTPSSVDEIWELATQPTFLLYTASVVAIVLFLVLYCEPRYGQTNILIYVGICSIIGSLTVMSIKAIGIAIKLTMEGWSQVAHFQTWVFVMVAISCIIIQLNYLNKALDTFDTAVVSPIHYAMFTSFTIFASVIMFKDWSGQSASSIASELCGFVTILSGTVVLHDTRSPDPASVSEMYMSVSPQVSWYFPANGDTWKRKSEEILLPDFDAILKQDHFT 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10532652 10541586 + CaPI482276_09g010130.1 Cam09g1013 135342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1013 398 PANTHER UNCHARACTERIZED 55 350 IPR008521 GO:0015095(InterPro)|GO:0015693(PANTHER)|GO:0015693(InterPro)|GO:0016020(InterPro)|GO:0016020(PANTHER)
Cam09g1013 398 Pfam Magnesium transporter NIPA 57 347 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
Cam09g1013 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 104 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1013 K22733 - - csv:101218768 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0452 Cam-Chr2:5227743 Cam09g1013 Cam-Chr9:10532652 5.40E-124 dispersed
Cam09g1013 Cam-Chr9:10532652 Cam11g0818 Cam-Chr11:10417117 1.70E-108 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1289 Blo01g01754 Blo12g00765 . Bda03g00417 Bpe02g00188 . . Bma01g02537 . . Cma01g00941 . . . . Cpe06g00921 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00847 . . . . . . Cmo01g00981 . . . . . . . Bhi09g01565 Tan01g2974 . . . . . Cla09g00961 Cam09g1013 Cec09g1016 Cco09g1028 . . Cre09g0976 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86