Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1019 ATGGAAGACGGAAACGCAGACGCTTCTTTGAACAAAGCCCCCTCTGTTTCTCAGGTGGTAGAAGAGTTGAAAGAGCTGTGGGGTATGACCTTTCCGGTCACTGCCATGAACTTCTTGGTGTTTTTCAGGCAGGTGGTCTCTGTTTTGTTCTTGGGCAGAATTGGGAGCCTGGAGCTAGCAGGTGGTGCACTTGCTATAGGATTTACAAATATTACAGGCTATTCTGTTATGGTGGGTTTAGCCGCTGGGTTGGAACCCATATGCAGCCAAGCCTTCGGAAGTAAAAATTGGGATCTCCTCTGTCTTTCTCTGCAGCGCATGATCTTAATCCTCTTCTTTGCAACTATACCCATCGGTTTTCTCTGGCTCAACCTTGACAACATCATGGTATTTTTAGGTCAAGATCAACAAATCACAAGTATGGCGGCTATTTACTGTATTTATTCTCTTCCAGACCTTTTAACAAACACCTTGTTGCAACCATTAAAAATATTTTTGAGGTCACAAAAGGACACGAAACCCATGATGTATTGCACTCTAGTAGCAGTTGGGCTTCATGTGCCTCTGAACTACATGATGGTGGTGGTGCTGGGGATGGGGATGCAAGGAGTGGCAATGGCTTCGGTGCTAACAAATTTGAACATTGTGGGATTGATGTCTGGATACGTGTGGGTGTGGGGAAGGAAAGGGGAGATGAGATGGACGTTGAAGTTGGGAGAGGTTTGTGGAGGCGTGGGGCCAGTGATGAAGTTGGCTGTACCGAGTTGCTTGGGAATATGTTTGGAGTGGTGGTGGTATGAAATAGTGACAGTGTTGTCTGGTTATTTATCCAATCCAACGTCGGCTGTGGCCGCCACTGGGATTCTCATCCAAACTACAAGCATGATGTACACCGTACCCCTGGCTCTCTCTGGTTGCGTCTCCACCAGGGTAGGGAATGAGCTGGGAAGTGGAAAGCCAAGGAAAGCGAAAGTTGCAGCAATGGTAGCATTGGGATGCGCATTTGTAATAGGCGGAATCAACGTGACGTGGACGGTGATTCTGAGGCAGACATGGGCCACACTTTTCACAGACGATGTCTTGGTTAAATCATTAGTCTCGTCTGCTTTGCCAATCATAGGCCTCTGCGAGCTTTTCAACTGCCCCCAGACCACCGGCTACGGCATCCTACGTGGCACTGCTCGTCCTGCCGTGGGTGCTCGTATCAACTTGGCTTCCTTTTACCTCGTGGGCACTCCTGTCGCTGTGGGCCTCGCCTTTGGGCTTAGACTTGGGTTTGTTGGGCTTTGGTTTGGGCTTCTCTCGGCCCAAGTCGCTTGTGCTGTGTCCATGCTCTATGTGGTTGTTGCCAACACTGATTGGGAGGCTGAGGCTTTGAAGGCTAAGAAGCTTGCTGGTTTGGAAATGACTGCTACTAATGATGTTCAGGAGGAAAGTAAGGAGTTGCTTGTTGAGGAAAATGGTCATCAACATTATATCTTCTAG 1485 48.48 MEDGNADASLNKAPSVSQVVEELKELWGMTFPVTAMNFLVFFRQVVSVLFLGRIGSLELAGGALAIGFTNITGYSVMVGLAAGLEPICSQAFGSKNWDLLCLSLQRMILILFFATIPIGFLWLNLDNIMVFLGQDQQITSMAAIYCIYSLPDLLTNTLLQPLKIFLRSQKDTKPMMYCTLVAVGLHVPLNYMMVVVLGMGMQGVAMASVLTNLNIVGLMSGYVWVWGRKGEMRWTLKLGEVCGGVGPVMKLAVPSCLGICLEWWWYEIVTVLSGYLSNPTSAVAATGILIQTTSMMYTVPLALSGCVSTRVGNELGSGKPRKAKVAAMVALGCAFVIGGINVTWTVILRQTWATLFTDDVLVKSLVSSALPIIGLCELFNCPQTTGYGILRGTARPAVGARINLASFYLVGTPVAVGLAFGLRLGFVGLWFGLLSAQVACAVSMLYVVVANTDWEAEALKAKKLAGLEMTATNDVQEESKELLVEENGHQHYIF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10598619 10603627 + CaPI482276_09g010190.1 Cam09g1019 135348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1019 494 NCBIfam MATE family efflux transporter 32 430 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam09g1019 494 CDD MATE_eukaryotic 22 460 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cam09g1019 494 Pfam MatE 254 415 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam09g1019 494 Pfam MatE 32 192 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam09g1019 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 457 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1019 K03327 - - csv:101219797 911.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0500 Cam-Chr6:7097360 Cam09g1019 Cam-Chr9:10598619 5.90E-130 dispersed
Cam09g1019 Cam-Chr9:10598619 Cam11g0215 Cam-Chr11:3696287 5.60E-117 dispersed
Cam09g1019 Cam-Chr9:10598619 Cam05g0936 Cam-Chr5:8469657 2.30E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1288 Blo01g01755 . . . Bpe02g00187 . . Bma01g02538 . . . Cma09g01151 Car01g00842 . . Cpe06g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01162 . . . . . . Bhi09g01574 Tan01g3001 . . . . . Cla09g00968 Cam09g1019 Cec09g1023 Cco09g1034 . . Cre09g0985 . . . Cme01g00744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006122 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 39