Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1024 ATGGTTGTTGATTCACTAAAACATGATTTTAACAACGTTATGATGTTGTCAGCATTGAATCATAGCATGTATGCTAGTAACGGTGGTGAACTTCGGAGCAGCACAACGCTTTGGGACGATGTCACAATACTAAATCTTTGTATTGCACATTGTGAAGGGTCAAGTTGCAATGTTGTGATGCTCCCAATCTGTCTTAGAGCGTTGAGACACTCTTTTCAGGGAAAAAAAAAAAAGAAAAAGGGTGTCTACAAAATTCAAAACCCATTTCTTCTCGTTCCCTCTCAAGAAATTCGAAGAACCTCAGCTGATTCTTCTTCGAAAATGGCGGACAGGGAAGAAGAAACCCCAGATCAAAACGAGTTGAAAATCCCCGTCTTCACCGTTCTCAAGAACGGCGCAATTCTCAAGAACATCTTCATAGTCAACAATGTTGCAGATCGAGAGAACGAGGAGGTAATAATCCTCGGACGACACCCAGATTGCAACATAATGCTCACACATCCAAGCATTAGCAGATTCCATCTCCAAATCCATTCAAACCCCTCTTCGCAGAAGCTTTGTGTTGTGGATTTATCATCAGTGCACGGAACATGGGTTTCAGGGAAGAGGATTGAAACAGGGGATAGAGTGGAGATGATGGAAGGAGATACTCTGAGGGTTGGTGGTTCGAGCAGAGTTTATAGGCTTCATTGGGTTCCTTTGAGCTGCGCTTATGATTTTGAAGGTCCTAAAGAAAAGAAGAAACATGAAGTAGCAATTGTAGAAGAGAAGGCTGTGCAGGATTGCGAGAAGGAGATTTCATTGTTGGATGAAACTAAAGAAACTGTGGTGGATTCAGTTTTTGGTAGTATTGAGCCACTGTATTCTGATGAGAATTGGAACAGAGAGATGATGAAAGAGATTCCTTTAGCACCTCCATTAAGTGACGTTGAAGAAATGGCTGTGTCTTCTGTTGACCGTGTCAAATTTTTGAGTGACTTGAGAAATGAATCCGAACAAGTGGAAACTAGTTTGATAAGCATACCTTTTGGAAATGAAATGAAACGTTTGGAAATGAATTTTCAACCCCCTTCTCTGCCTCTTTCAGCAGATAATCTGTCTTTCAATGTTGAAAACATTATCATGTCTTCATTCTTTGGGAGTGACAGCAAAAGTTCCTCGAGTAGTACGAATGATACTAGTAGTATATGGAACATAACGTTGGAAGATCTATCAAGTTCCCTGAATGAAAAGCAACAGTGTCACAGTAAAATTGACCCTTCTCTGCCTCTTTCAGCTGAGAATCTGTCTTTCAATGTTGAAAACATCATCATGTCTTCATTTTTTGACGGTGAAAGCAAGAGTTCATCTTGTAATATGTTTGAATGGAAGGAAACTGGTAGTATCTTGACCATACCATTGGAAAATAACTCAAATAATTTATCTGAGGTTGATGATATAGAAGCTACTCCAGAGTATGAATATCAACAATCAACTGATGAAAACAAGGGTCAGCGACTGCAGTCCATGTCTCTTTACAGAGAGGATTCTTCTGATGTTCAAGACACTGCCTTGACTGCATTCATTGATGGTGAATGGGAGAGTCCATCTAGAAATAAATGTGAACAGAAGGAAATTAGCGACATCATGACCATGCCTTTTGGACATGAATTAGGCCATGTGGCTGTGGTTGATAATGAGAAGCCCATTTCTGATAATGAAAGTCAACGATTTGTTGCAGAGAGGAATTTGTGTTCGAATTTCTCAGATGATGAAACCCAAGATCTACCAGTCCATGAAGTAAAATCATCAAGCAAACAACCTCTGCTTGCTTTGCAATCAGAAACAGTAACAGAAAAGAATGAGTGCATGCTGGAACTGGAGTTGCATCCTCTAGAGGACAATCATTCTTCAATTAGCACAGAAAAAGGGATTCAGGAAATTGAACTTCTTACCAAAATTCAAGCAGAAGGTGGGGAAGTTTATGTCGATAAAGGTAATGGAGAGTTATATCATCATGTAACAGAGTATTTTCTGGATTGCCTATCAGAATCCAAAAATGACAGTGCTGTGAAGGCCACATCTGAGGTAACACCAAACTCATTAATGAAACAGGATGTTGAATGTTGCGTCGAAGAAAACTATAATGCAAGACTCGAAACGCTCGAACCGAGAAAAAGCAGTGTACCAGGGGAAGATTATGAACATAAGGAACTCTCAGAGCCCAGTTTTATATCTTGTGCATCGGAATATGTTTACTCATCTCTTCTAGATGAGGAAGTCCCCCCAGAGATTTCATTTGAGAAAGAATGCCAGACACCACATGAGAACTTAGATGTGTCCTTGCCCATAAGATCGGAGAGTGCATTAGCCATGGGGGGAAACATTTGGTTAAGAAGGGGTAAACCAACTAGTTTTCCTCGAATTGAGACAGGTGTGAGTCGAACAAATCGAGCAGGGACATTGTTAATGGATGAAATTAACCATGAGATGGCAGGAGATAAATCAGTAATAAATACTCTCTCTCATTTGGATGAGGAGGAGGAAGAAGAAATCTTTACTCCAGACAAGGAGAATTTCACACCAAACACACTTTTGATGAAATCATTGAAAAAAAAGAATAGCATAGAAGACAGTGGGAATTGCTTCAGGTCATCCAAGTCCCAAACATCAATTTTCAAGTCTAGACATAAAGTCAAACTAGAAGAAGAGCTAAGTGAAGATTCAGACAAGGAGAACCAAACTCCTAGACTTCTCCAAGAACAAAAACTGTCAAAACAAATCTCTAAGAATAGGAGGTTTGAACAGGAAAAAACAATGACAAAGAAAGCAGGAGTGGAACGGGCTCCTTTTCAATCTTTGCAGTCAAACATTGCCGGAAAGAAGAGACCGGAGGCTACTTTAGTTAAGAAGTCTGCCAGAAAGAGTAATATATCTGTTTGCATAGGGGCCATGAAGAATAAATTCACTGTGGAAGGAAAGAAGCGTTGGACCATGGTTGTGGACACCAATTCTCTTCTGAACAAGGAATCGATGAAGTCACTACAGCTTTTAGAAGGTCTCCAAGGGACACATCTGATCGTTCCACGAATCGTCATAAGGGAGCTAGACTGCTTGAGGAGACACGGCAGCCTCTTTCGAAAAACAACAGAGGCAGCTTCAGTTCTTCAATGGATCGAAGATTGTATGGTGCAAGCAAGGTGGTGGATCCATGTTCAAAGTTCGGAAGAAGGTGTGCCTCCTGTGACGCCTCCCGCTACTCCTCAATCTACATATACTGAGGGGAGCAGTCAAAGTTTGTTCTGGAGAACAACGAGCTCAATCCAATCCATAACGCAGAGAAGTTTCATGGAAGCTCTTTCACCAACTCCAGAAGATCATATCCTTGACTGTGCACTTCACTTTAGGAGGGGAGTGAACCATGGACAACTCGTTCTTATAAGCGACGACGTGAGCCTGAAAATTAAAGCAATGGCTGAGGGACTAATTTGTGAAACAGCCAAAGAGTTCAGGGAGAGTCTAGTGAATCCATTTTCAGAGAGGTTCTTGTGGGCTGACAGCTCTCCAAGGGGCCTGACATGGTCTTGCCCTGATGATATGGTGTTGAGGGAACGCTATGATCGATGCTCGTCGAGGTCGTTGAAAGGAGCAGAGGGAGCTAAGGGGCTGAAGCTCATTTTGCTTCACAACTCCCAGTATGGAATGTTCAGATAA 3693 41.4 MVVDSLKHDFNNVMMLSALNHSMYASNGGELRSSTTLWDDVTILNLCIAHCEGSSCNVVMLPICLRALRHSFQGKKKKKKGVYKIQNPFLLVPSQEIRRTSADSSSKMADREEETPDQNELKIPVFTVLKNGAILKNIFIVNNVADRENEEVIILGRHPDCNIMLTHPSISRFHLQIHSNPSSQKLCVVDLSSVHGTWVSGKRIETGDRVEMMEGDTLRVGGSSRVYRLHWVPLSCAYDFEGPKEKKKHEVAIVEEKAVQDCEKEISLLDETKETVVDSVFGSIEPLYSDENWNREMMKEIPLAPPLSDVEEMAVSSVDRVKFLSDLRNESEQVETSLISIPFGNEMKRLEMNFQPPSLPLSADNLSFNVENIIMSSFFGSDSKSSSSSTNDTSSIWNITLEDLSSSLNEKQQCHSKIDPSLPLSAENLSFNVENIIMSSFFDGESKSSSCNMFEWKETGSILTIPLENNSNNLSEVDDIEATPEYEYQQSTDENKGQRLQSMSLYREDSSDVQDTALTAFIDGEWESPSRNKCEQKEISDIMTMPFGHELGHVAVVDNEKPISDNESQRFVAERNLCSNFSDDETQDLPVHEVKSSSKQPLLALQSETVTEKNECMLELELHPLEDNHSSISTEKGIQEIELLTKIQAEGGEVYVDKGNGELYHHVTEYFLDCLSESKNDSAVKATSEVTPNSLMKQDVECCVEENYNARLETLEPRKSSVPGEDYEHKELSEPSFISCASEYVYSSLLDEEVPPEISFEKECQTPHENLDVSLPIRSESALAMGGNIWLRRGKPTSFPRIETGVSRTNRAGTLLMDEINHEMAGDKSVINTLSHLDEEEEEEIFTPDKENFTPNTLLMKSLKKKNSIEDSGNCFRSSKSQTSIFKSRHKVKLEEELSEDSDKENQTPRLLQEQKLSKQISKNRRFEQEKTMTKKAGVERAPFQSLQSNIAGKKRPEATLVKKSARKSNISVCIGAMKNKFTVEGKKRWTMVVDTNSLLNKESMKSLQLLEGLQGTHLIVPRIVIRELDCLRRHGSLFRKTTEAASVLQWIEDCMVQARWWIHVQSSEEGVPPVTPPATPQSTYTEGSSQSLFWRTTSSIQSITQRSFMEALSPTPEDHILDCALHFRRGVNHGQLVLISDDVSLKIKAMAEGLICETAKEFRESLVNPFSERFLWADSSPRGLTWSCPDDMVLRERYDRCSSRSLKGAEGAKGLKLILLHNSQYGMFR 1230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10650995 10657146 + CaPI482276_09g010240.1 Cam09g1024 135353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1024 1230 CDD PIN_Smg5-6-like 993 1166 - -
Cam09g1024 1230 MobiDBLite consensus disorder prediction 97 117 - -
Cam09g1024 1230 MobiDBLite consensus disorder prediction 919 937 - -
Cam09g1024 1230 MobiDBLite consensus disorder prediction 887 937 - -
Cam09g1024 1230 CDD FHA_PS1-like 123 235 - -
Cam09g1024 1230 ProSiteProfiles Forkhead-associated (FHA) domain profile. 153 204 IPR000253 GO:0005515(InterPro)
Cam09g1024 1230 SMART FHA_2 152 204 IPR000253 GO:0005515(InterPro)
Cam09g1024 1230 SUPERFAMILY SMAD/FHA domain 128 234 IPR008984 GO:0005515(InterPro)
Cam09g1024 1230 PANTHER TRANSMEMBRANE PROTEIN 18 108 1219 - GO:0031965(PANTHER)
Cam09g1024 1230 Pfam FHA domain 154 221 IPR000253 GO:0005515(InterPro)
Cam09g1024 1230 Gene3D - 94 234 - -
Cam09g1024 1230 MobiDBLite consensus disorder prediction 103 117 - -
Cam09g1024 1230 Gene3D - 986 1167 - -
Cam09g1024 1230 MobiDBLite consensus disorder prediction 888 910 - -
Cam09g1024 1230 Pfam PIN domain 992 1160 IPR002716 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1024 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1223 . . . . . Bpe04g00386 . . . . . Cma09g01091 . . . Cpe06g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01100 . . . Car09g00989 . . . . . . . . . Cla09g00972 Cam09g1024 Cec09g1027 Cco09g1039 . . Cre09g0989 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012603 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 29