Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1025 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCTTTTCCTAATAATAATATTCAGCAACCAGCACAAAAATGGGCAGATGCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTTGAAGAACGGACTGAATCGAAGGCCTCCCTAAGCTGTAACCCGAATCAACAAATTGAAATCCTTGATAAAGATAGTAATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGATCCGAGGGCAATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATCGTTGGTCGGAGGAGCCAAGTCTTTGGGAGGCCAGATGAACTTGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGTTAATCTCGACGGCTGGTAGTCTGCTTCCATCTGTAAAGCATAACTTGTCTGCTGCTGTTCCTGCAGTCGGGCAGCTGGAGCAGCTCGACAAAGTTCTTTTCGCGTCTGGACCCGGGACTGATAATGGTGGTGTTCAGTCACAACATGGTGATGGAACCAAACTCCCCGAGCTTCCAACCCAAGTGGACGGAAGTAGCAAGTGTGGGAAAGAACAGAACATGACTGTTGAAGAACACGAATCAAAGGATGAAGAAGACGCAGATGAAAATGAGAACCTTCCGCCCGGTTCGTATGAAATATTGCAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATATGTGGAAAAGGGTTCAAGAGAGATGCAAATCTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACTGCAGCTGCCCTTGCAAAGCCGAACAAAGAAATGGGTTCCGAGACCATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGTAACAAGGATCATAAGAAGTTTCAGCCTTTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCATTGTGGGAAAGATAAATGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTCGATGAGTCAAAGGGAGCAGTCATGTCCTGTGATCGAGGAGAACGCTATGAAACAATGAATAAGCTTGGGAGCATAAATTTCAGTTTCGGGTCGGTTGCTTCAGGAGGAAGCTCAGTTGAAACCATAGGAGATGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCACCTCTGAACTTCGATTCATGTAATTTTGGTGGCTTTCATGAGTTTCCTCGACCGCCATTCGAAAACACAGACAATGCATTTTCGTTCCTTATCCCGGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTTGA 1527 43.48 MDPEDSLCSSEVWTKSSFPNNNIQQPAQKWADASILDYAMEQPFQEFEERTESKASLSCNPNQQIEILDKDSNQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVFGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPAVGQLEQLDKVLFASGPGTDNGGVQSQHGDGTKLPELPTQVDGSSKCGKEQNMTVEEHESKDEEDADENENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEMGSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAVMSCDRGERYETMNKLGSINFSFGSVASGGSSVETIGDAKGGVDDPLSYFSPLNFDSCNFGGFHEFPRPPFENTDNAFSFLIPASSNYTQKSGAESSS 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10661718 10663244 - CaPI482276_09g010250.1 Cam09g1025 135354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1025 508 MobiDBLite consensus disorder prediction 182 240 - -
Cam09g1025 508 SUPERFAMILY beta-beta-alpha zinc fingers 257 285 IPR036236 -
Cam09g1025 508 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 491 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Cam09g1025 508 SMART c2h2final6 308 341 IPR013087 -
Cam09g1025 508 SMART c2h2final6 346 368 IPR013087 -
Cam09g1025 508 SMART c2h2final6 259 281 IPR013087 -
Cam09g1025 508 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Cam09g1025 508 Gene3D Classic Zinc Finger 243 314 - -
Cam09g1025 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1368 Cam-Chr1:26535316 Cam09g1025 Cam-Chr9:10661718 1.60E-60 dispersed
Cam01g1917 Cam-Chr1:32620817 Cam09g1025 Cam-Chr9:10661718 4.10E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52587 None None None None Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1025 - - - 0.0