Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1054 ATGGGTGATCTCGAAACTCGAAGAATTAGAAATATATGTATATTAGCACACGTCGATCATGGCAAAACGACACTTGCTGACCATCTTATCGCCTCCTCGGGAGGCGGTTTGATCCACCCAAAGATGGCGGGCCGCCTCCGTTTCATGGATTATCTTGATGAGGAACAAAGGCGGGCGATTACTATGAAGAGCTCATCGATTGGTCTACGGTACAAGGAATACTCTATCAATCTCATTGATTCGCCTGGCCATATGGATTTTTGTAGCGAAGTGTCGACTGCTGCTAGATTGAGTGATGGGGCATTGGTTTTAGTTGATGCTGTGGAGGGTGTGCACATTCAAACCCATGCTGTCTTGCGACAGGCTTGGATTGAGAAGCTTACGCCCTGTTTGGTTCTTAATAAGATTGATAGGTTGATATGTGAGTTGAAGTTGAGTCCTATGGAAGCGTATACTCGTTTGTTGAGGATTGTTCATGAAGTTAATGGGATAATGAGTGCATACAAGTCTGAGAAATATTTGACCGATGTAGATTCAATACTTGCAGGTTCTTCAGGTGAGGTGAATGACGAGAATCTAGAGTTTATAGAGGATGACGAAGAAGATACATTTCAACCGCAGAAAGGGAATGTGGTGTTTGTGTGTGCTTTAGATGGGTGGGGTTTTGGCATTAATGAATTTGCTGAGTTTTATGCTTCAAAGCTTGGGGCCAATGTATCTGCATTGAAGAAGGCCTTGTGGGGTCCACGGTATTTTAATCCAAAGACCAAGATGATTGTTGGAAAGAAGGCCATGGCTGGAGGAAGTAAAGCGCGGCCTATGTTTGTTCAATTTGTGCTTGAAAGACTTTGGGACGTTTATGAGGCTGCTTTAGAAACTGATGGGAATAAGGAGGTACTTCAAAAGGTTAATAGTACATTTAATTTGAATATACCAGCTCGAGAACTTTCTAACAAGGATCCAAAGGTGGTTCTTCAAGCTATTATGAGTCGTTGGCTTCCTCTTTCAGATACAATATTGTCAATGGTCGTAAACTGTATGCCTGACCCAATTGCTGCACAATCATTTCGAATATCAAGGTTGCTTCCGAAGAGGGATATAGTTGATACCGGAGTTGACGTCAATGTACTAACTGAAGCAGATCTTGTCAAGAAATCCATTGAAGCTTGTGATTCAAGGCCTGAAGCTCCATTTGTTGCTTTTGTGTCCAAGATGTTTGCAGTTCCACTTAAAATGCTTCCACGGAGGGAAAATCATGGTGAGACTACTAATATTTCAGCTGAAGATGGTGGAGATGGTGAATCAGACGAGTGTTTCCTTGCATTTGCAAGGGTATTTAGTGGGGTTCTTTATTCTGGACAGAGAGTGTTTGTGCTTTCAGCCTTATATGACCCAACCAAAGGGGAATCAATGCACAAACACATTCAGGAGGCTGAATTGCATTCATTTTATCTCATGATGGGCCAAGGCTTGAAACCAGTGACCTCAGTAAAAGCAGGAAACCTTGTTGCAATTCGTGGTCTTGGCCATCACATATTGAAAAGTGCAACTCTTTCATCCACTAGAAATTGCTGGCCTTTCTCAAGTATGGTGTTCCAGGTTGCGCCAACACTTAGAGTTGCACTTGAGCCATCTGATCCTGGAGATATAGGTGCATTGTTGAAAGGCTTAAGGCTTTTAAATCGAGCAGACCCTTTTGTAGAGGTAACTGTTTCAGCAAGAGGAGAACATGTTCTTGCTGCAGCAGGAGAAGTTCATCTCGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCCAGGGTAAGCTTGGAAGTCTCTCCACCTCTTGTATCGTATAAAGAGACAATTGAAGGAGAGGCATCTAGTGTGTTGGATTATTTTAAGGTGTTGTCTGAAAGCACAGATTGTGTTACTAAGAAAACCCCAAATGGTAGATGTATCGTCAGAGTGCAGGTACTGAAACTTCCACCTGCTCTTGCTAAAGTACTTGATGAAAATTCTGATGTATTGGGAGATATTATTGGAGTCAAGTTGGGGCAGAACTATAAAAACTTGGAAACAAAGAGATCAAATCTGAGAGAGAATGATAATCCAACAGAAGCAGTAAAAAAACTAATAGCAGATGCAGTATGTAGTAATGTATCTTCAAAGGATGACCATGAAGGTAGTCGGGCTGACAAACACAATGCGCTGTGGTCGAAGCTTCTTAAGCGATTTTGGGCACTTGGACCACAGCAGATTGGTCCTAACATTCTGATTAACCCAGATCCGAAAGTAAAGGATCCTGATGGCTCTGTTCTTATTCGAGGCTCGCCTCATGCATCACAGAGATTGGGTTTTGTGGATGATTCCTTAAATGCTAGCTTGGATCCTGAAACATCTTTGGTAGGCGATATGATTTCTGCAGCATCTCCAGAAGGAACTCAGACATTATGCATGGAAGCAGCATCTCTTGAGAACAGCGTTTTATCTGGGTTTCAGCTTGCTACATCAGCTGGGCCCTTATGTGATGAACCTATGTGGGGGTTGGCATTTCTTGTTGAGGCCTCTATATCTTCGCTGTCTGGGAATTCAGATGAATCTGAATCTCCCTTTCAACCAGAGAACAACGCTGTCTTTTCTGGTCAAGTTATGGCAGCTGTAAAGGATGCCTGTAGAGCAGCTGTACTTCATAAGAAACCACGGCTTGTTGAAGCCATGTACTTCTGTGAATTGAATACTCCCACTGAGTATTTGGGTCCAATGTATGCTGTACTTGCACGAAGGCGAGCCCGGATTTTGAAAGAAGAAATGCAGGAAGGTTCACCTTTGTTTACTGTGCATGCGTATGTGCCAGTTTCAGAAAGCTTTGGTTTTGCAGATGAGTTAAGGAGATGGACTTCCGGAGCAGCAAGTGCTCTTCTAGTGCTTAGCCATTGGGAAGAACTATGTGAAGATCCTTTTTTTATTCCCAAGACGGAAGAAGAAATAGAAGAGTTTGGAGATGGTTCTAGCGTGCTTCCCAACACAGCAAGAAAGCTTATTGATACTGTAAGACGACGTAAGGGTCTTCCAGTGGAAGAAAAAGTTGTACAACATGCAACAAAGCAGAGAACTTTGGCTCGGAAAGTATAA 3114 42.77 MGDLETRRIRNICILAHVDHGKTTLADHLIASSGGGLIHPKMAGRLRFMDYLDEEQRRAITMKSSSIGLRYKEYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLICELKLSPMEAYTRLLRIVHEVNGIMSAYKSEKYLTDVDSILAGSSGEVNDENLEFIEDDEEDTFQPQKGNVVFVCALDGWGFGINEFAEFYASKLGANVSALKKALWGPRYFNPKTKMIVGKKAMAGGSKARPMFVQFVLERLWDVYEAALETDGNKEVLQKVNSTFNLNIPARELSNKDPKVVLQAIMSRWLPLSDTILSMVVNCMPDPIAAQSFRISRLLPKRDIVDTGVDVNVLTEADLVKKSIEACDSRPEAPFVAFVSKMFAVPLKMLPRRENHGETTNISAEDGGDGESDECFLAFARVFSGVLYSGQRVFVLSALYDPTKGESMHKHIQEAELHSFYLMMGQGLKPVTSVKAGNLVAIRGLGHHILKSATLSSTRNCWPFSSMVFQVAPTLRVALEPSDPGDIGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFARVSLEVSPPLVSYKETIEGEASSVLDYFKVLSESTDCVTKKTPNGRCIVRVQVLKLPPALAKVLDENSDVLGDIIGVKLGQNYKNLETKRSNLRENDNPTEAVKKLIADAVCSNVSSKDDHEGSRADKHNALWSKLLKRFWALGPQQIGPNILINPDPKVKDPDGSVLIRGSPHASQRLGFVDDSLNASLDPETSLVGDMISAASPEGTQTLCMEAASLENSVLSGFQLATSAGPLCDEPMWGLAFLVEASISSLSGNSDESESPFQPENNAVFSGQVMAAVKDACRAAVLHKKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARILKEEMQEGSPLFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEELCEDPFFIPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHATKQRTLARKV 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10895394 10898507 - CaPI482276_09g010540.1 Cam09g1054 135383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1054 1037 SUPERFAMILY Translation proteins 388 530 IPR009000 -
Cam09g1054 1037 SMART EFG_C_a 895 984 IPR000640 -
Cam09g1054 1037 FunFam Translation elongation factor 2 535 611 - -
Cam09g1054 1037 FunFam Elongation factor 2-like protein 2 212 - -
Cam09g1054 1037 Pfam Elongation factor G C-terminus 895 979 IPR000640 -
Cam09g1054 1037 NCBIfam small GTP-binding protein domain 9 138 IPR005225 GO:0005525(InterPro)
Cam09g1054 1037 Gene3D - 631 892 IPR014721 -
Cam09g1054 1037 CDD EF2 10 232 - -
Cam09g1054 1037 CDD aeEF2_snRNP_like_IV 607 902 - -
Cam09g1054 1037 Gene3D Translation factors 350 533 - -
Cam09g1054 1037 Gene3D - 3 210 IPR027417 -
Cam09g1054 1037 FunFam Elongation factor like GTPase 1 224 333 - -
Cam09g1054 1037 SUPERFAMILY EF-G C-terminal domain-like 898 996 IPR035647 -
Cam09g1054 1037 Gene3D Yeast translation eEF2 (G' domain) 224 333 - -
Cam09g1054 1037 Gene3D Elongation Factor G (Translational Gtpase), domain 3 535 611 - -
Cam09g1054 1037 Pfam Elongation factor Tu GTP binding domain 8 223 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 PRINTS GTP-binding elongation factor signature 129 138 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 PRINTS GTP-binding elongation factor signature 93 104 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 PRINTS GTP-binding elongation factor signature 11 24 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 PRINTS GTP-binding elongation factor signature 57 65 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 PRINTS GTP-binding elongation factor signature 77 87 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 CDD eEF2_snRNP_like_C 898 976 - -
Cam09g1054 1037 FunFam Elongation factor like GTPase 1 894 1029 - -
Cam09g1054 1037 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 1034 - GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0042256(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cam09g1054 1037 CDD EF2_II 397 521 - -
Cam09g1054 1037 Gene3D - 894 1029 - -
Cam09g1054 1037 CDD EF2_snRNP_III 536 607 - -
Cam09g1054 1037 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 7 239 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam09g1054 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 348 IPR027417 -
Cam09g1054 1037 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 897 IPR020568 -
Cam09g1054 1037 SUPERFAMILY EF-G C-terminal domain-like 533 608 IPR035647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1913 Cam-Chr2:32188200 Cam09g1054 Cam-Chr9:10895394 6.80E-115 dispersed
Cam09g1054 Cam-Chr9:10895394 Cam10g1636 Cam-Chr10:30192048 2.70E-20 dispersed
Cam09g1054 Cam-Chr9:10895394 Cam02g1897 Cam-Chr2:32010283 2.60E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1054 K14536 - csv:101220903 1949.1