Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1073 ATGTGTAACAAGCTGAACCAAATCAGAACCGGTTGGTTTGGTCGGGTTGACAAGCAAGACTTGGACCAAAGTGGACCCGGATCCGGTTGGTGCTTGGGCCTTCACTTGGTTCGCGTGGTCTCACGGCCATCAAACCAAAATTCCCTTTTCCCTCTCTTTCATTTGCTTCTTCGTCTTCATCCATCCATGGAGAGCCTGAAGAAGTCAGTGATCAAAATCGCCTATACCAGAGACCATGCTAACCTCTCTTCTCTGCAACGCTCTTTCATCCCCTTCCTCTACATGGCGTCTTCTCTCTACAAGCTCGGTCTGTCCCTTCGTCACCATTTCTACCTCTACGGCATATTTCGCAAGCATCGGTTGCCAGTGCCGGTTATTAGTGTTGGGAATTTGACTTGGGGAGGCAATGGGAAAACACCAATGGTCGAGTTCATTGCCTCATGGCTTGCGGGCTCTGGGATTTCACCTCTAATTCTTAATAGGGGCTATGCTGGTGGAGACGAAGCAAGAATGCTTAGGAGGCATCTTTCTGGGAGTTCCATTAAAGTAGGTATTGGAGCAGATAGGAGAGCTACTGCTGCTTGGTATTTTAACAAATATGGTTATGTTGAATCTCAAAGTAGCACGTTGACTGAGAAGCATTGCTTAGAACAAGTGGGAAATCTTCCTAAGTCTGAAAAAATTGGTGCTGTTATCCTTGATGATGGAATGCAGCACTGGAGTTTGCACCATGACTTGGAGGTTGTTATGTTCAATGGGATAACATTGTTGGGAAATGGGCAATTATTACCACTTGGACCTTTAAGAGAACCATTAGCTGCACTCAAGAGGGCAGACGTTGCCATTATTCATCATGCTAATCTGGTTTCAGCACAAAATATTGAAGATATTGTGATAATGTTGCGGAAAATTAAGGATTCACTTACCGTGGTGTTTACTGAAATGTGTCCCTCATTCTTCTTTGAAGTGACAAATATAAACTCCATAATATCCTTGGGAACATTTTCTAAGAGTGTAGTATTATGCGTCTCTGCCATTGGCTCTGCTGATGCTTTTGTGCAGACAATGCAAAAGATAGGAGCATATCATGTTGATCGACTCGACTTCAGTGACCATCACGTCTTTCAAGACAGGGATATTGCACTGATCAAAATAAAGCTTGAGGAATTGGAGAAGAAATTTGCTTCCAAGCCAGTCATTGTTGTTACGGAAAAGGATTATGATCGGGATCCTATGACATTCAAGGGCTTGCATCCATACCGTGTTTTCGCTCTCCGTTCTCAACTGCAAATCATTCGCACCAAAGGTTGCAGTGAGAATAGCTTCAAGACGCTGTTGGAGTCGGTGGTACGAGTAAAACTCTCTTCTGTAATGAGCCGTTCAGCGTTCACCCTTCGCGTTTTCTTTCAAACTTCCCGTCGTTCAATCACTCCCCTACACGCCTCAGTCGCTCTCGTTTTCGCCGGTGCCGGCATCCCTCTTCGAGTCTCCGCCTCTGCGTGGGTGTTCATTGATACATCCGAAATCAAGCGTGTTACATTCGTTGCTTTTGGGATGCTCTCAATATCAACCACATCTTCTCTGTTTCGATTACCGGTAAAATCATGTAAAACCCTGCTGTGGTTCTTTTTGTTATTCGCCTTCTTTCTCATTAGTCATTCCTGCACAGGGATAGAAACAATGAAGTTGAAGCTCGACAGCAAGAGCAAGAGCTTGCTGCAGGCGAGCAAGCTTAAGAAAAAGCATGGTGAAAAGAAAAGCCACGTTAATGAAAGCAGCAAGAGCCAAGCGGAAAACCGGAACAGTACCGAACTACATTTAGAACAAGAAGCTTTAACCTTAGATGAGGCTCCATTACAACAACTTTTGGATTCTGCTCCACCCTTGGATTATAGCGAGGATCATGTCAGCGCGGGCGACAACCATGGTAATTTCGAGAATGATCAGGACCAAGAAAACGAGAATGACAACCCCGTACCTGATCAAGTAGATGAGGAAAGCGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACTATTGGAGATGTTCCCTTGGAATGGTATAGAGACGAGAAGCATATTGGATATGACGTATCGGGAAAGAAAATATTCAAGAAAGAAAGAGAAGACAAATTACAATCATTTTTAGCAAGTGCTGATGACTCAAAAAGTTGGCGCAAGGTATATGACGAATATAATGATGAGGTAATAGAGTTATCGAAGGAAGAAGTCAGGCAACTGCGGAGACTGCTCAAAGGAAAGGCTCCACATGCAGACTTTGATCCATATCCGTCTTATGTTGATTGGTTTAAGTGGGATGATGCTAAGCACCCACTGTCAAATGCACCTGAACCAAAGAGGCGTTTTGTTCGGTCAAAATGGGAAGCCAAGAAGGTGGTTCAATTAGTTCGGGCAATTCGAAATGGACATATTAATTTTGACAAGCCGAAAGAAGAGCAACGTTTCTACCATTTGTGGGGTGATGATTCTAGCTCCACAGAGAAGACCGCACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCAGGTCATGATGAATCATATAATCCTTCATTGGAATATATCCCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTATGAAGAAGATCGACCAAAGTTTATTCCTAGGAGGTTTACATCCATGAGAAGTGTACCTGCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATCTGTACTTGTGCCCTCGTGTCCGGAAGAAACGTATTAATATTGATCCTGAATCCTTGAAGCCTAAGCTGCCAAACCGGAAAGATCTTAGACCTTATCCGACTACATGCTATCTTGAATATAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAACGGCCAATGGATTGCTTCAGGTTCTTTGGATGGAACTGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGTATGTAGCTTGGAATCCTTTGCCTGAGCTTCCGATATTGGCTGCTGCTGTGGGTGTTGATGTATTGCTTTTAAACACTGGTTTTGGGGACGGGGAGGTTCAAGCAAAAATTAAGGAACTTCTCCATGTTGACACACTTCCTGGAACAGAAAATTCTGATAAAACGCCAGTTGCAACCTGGCTTCAAGATGACAAGATCGAGGGGATTAGATTGAGGCATTTTAAGACTGTAACTGCAGTTGAGTGGCATCGTAAAGGAGATTACCTTTCAACAGTTATGCCAGCTGATATCCTATTTAATTTTCTCTCTAGAAAGCTAACACAAAAAATTCCGTTCAAGTTGCACGGGCTTCCTGTTTCATCAGCTTTTCATCCCACTCAATCCATCCTCTTTGTATCGACAAAGAAGGAGGTCCGTGTTTATAATCTATTGAAGCAAAAACTCATGAAGAAACTGAAAACTGGACTCCGGGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTTGATATGGACCTTTCATCACAGCCTTACAAAATTCTCAGCTGTCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCACGCCCGTTGTTCGCATCCTGCTCAGATGATTGCACTGCATATGTTTTCCATGGGATGGTTTACTTGGATCTGACACAGAATCCCCTTATTACACCGTTGGAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGATTGCAAATTTCACCCGATGCAGCCATGGTTATTTACTGCTGGTGCAGATTCATCGAGGCCATTGCTATTGAAATCTCTTGGTTGGGAATTGTCGAAGCTCACTTCTCCTACCCCATGGGCGGGTCCTGCTTTTCATTCTTACTCTTTTTAG 3924 43.3 MCNKLNQIRTGWFGRVDKQDLDQSGPGSGWCLGLHLVRVVSRPSNQNSLFPLFHLLLRLHPSMESLKKSVIKIAYTRDHANLSSLQRSFIPFLYMASSLYKLGLSLRHHFYLYGIFRKHRLPVPVISVGNLTWGGNGKTPMVEFIASWLAGSGISPLILNRGYAGGDEARMLRRHLSGSSIKVGIGADRRATAAWYFNKYGYVESQSSTLTEKHCLEQVGNLPKSEKIGAVILDDGMQHWSLHHDLEVVMFNGITLLGNGQLLPLGPLREPLAALKRADVAIIHHANLVSAQNIEDIVIMLRKIKDSLTVVFTEMCPSFFFEVTNINSIISLGTFSKSVVLCVSAIGSADAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKIKLEELEKKFASKPVIVVTEKDYDRDPMTFKGLHPYRVFALRSQLQIIRTKGCSENSFKTLLESVVRVKLSSVMSRSAFTLRVFFQTSRRSITPLHASVALVFAGAGIPLRVSASAWVFIDTSEIKRVTFVAFGMLSISTTSSLFRLPVKSCKTLLWFFLLFAFFLISHSCTGIETMKLKLDSKSKSLLQASKLKKKHGEKKSHVNESSKSQAENRNSTELHLEQEALTLDEAPLQQLLDSAPPLDYSEDHVSAGDNHGNFENDQDQENENDNPVPDQVDEESDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDVSGKKIFKKEREDKLQSFLASADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGKAPHADFDPYPSYVDWFKWDDAKHPLSNAPEPKRRFVRSKWEAKKVVQLVRAIRNGHINFDKPKEEQRFYHLWGDDSSSTEKTAHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKIKELLHVDTLPGTENSDKTPVATWLQDDKIEGIRLRHFKTVTAVEWHRKGDYLSTVMPADILFNFLSRKLTQKIPFKLHGLPVSSAFHPTQSILFVSTKKEVRVYNLLKQKLMKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDCTAYVFHGMVYLDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSSRPLLLKSLGWELSKLTSPTPWAGPAFHSYSF 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11090468 11105735 + CaPI482276_09g010730.1 Cam09g1073 135402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1073 1307 ProSiteProfiles Trp-Asp (WD) repeats profile. 950 991 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 MobiDBLite consensus disorder prediction 650 671 - -
Cam09g1073 1307 Pfam WD domain, G-beta repeat 945 981 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 Pfam WD domain, G-beta repeat 1241 1275 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 Pfam WD domain, G-beta repeat 1189 1225 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 Pfam BOP1NT (NUC169) domain 688 943 IPR012953 GO:0006364(InterPro)
Cam09g1073 1307 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 581 1276 IPR028598 GO:0000463(PANTHER)|GO:0030687(PANTHER)|GO:0042254(InterPro)|GO:0043021(PANTHER)|GO:0070545(PANTHER)
Cam09g1073 1307 MobiDBLite consensus disorder prediction 635 649 - -
Cam09g1073 1307 MobiDBLite consensus disorder prediction 577 602 - -
Cam09g1073 1307 FunFam Ribosome biogenesis protein BOP1 homolog 933 1280 - -
Cam09g1073 1307 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 573 1281 IPR028598 GO:0042254(InterPro)
Cam09g1073 1307 SMART BOP1NT_2 688 943 IPR012953 GO:0006364(InterPro)
Cam09g1073 1307 Hamap Tetraacyldisaccharide 4'-kinase [lpxK]. 70 451 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cam09g1073 1307 Gene3D - 933 1279 IPR015943 GO:0005515(InterPro)
Cam09g1073 1307 MobiDBLite consensus disorder prediction 626 682 - -
Cam09g1073 1307 NCBIfam tetraacyldisaccharide 4'-kinase 116 407 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cam09g1073 1307 SUPERFAMILY WD40 repeat-like 907 1275 IPR036322 GO:0005515(InterPro)
Cam09g1073 1307 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 950 987 - -
Cam09g1073 1307 SMART WD40_4 1144 1183 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 SMART WD40_4 1104 1141 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 SMART WD40_4 1187 1226 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 SMART WD40_4 943 982 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 SMART WD40_4 1238 1277 IPR001680 GO:0005515(InterPro)
Cam09g1073 1307 ProSitePatterns Trp-Asp (WD) repeats signature. 969 983 IPR019775 -
Cam09g1073 1307 Pfam Tetraacyldisaccharide-1-P 4'-kinase 92 437 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1073 K14824 - - csv:101220511 1259.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0149 Cam-Chr8:2848144 Cam09g1073 Cam-Chr9:11090468 0.00E+00 dispersed
Cam09g1073 Cam-Chr9:11090468 Cam10g1687 Cam-Chr10:30861855 8.10E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003594 1 10 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 2 1 1 2 1 1 2 0 1 1 0 43