Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1075 ATGACAATTACAAGAGGGAACATTCCTTTTCCTTCCCCTTCCCCTTTCCCCTTCTCCTCCTCCTCTCGCTGTCTCTCTTTGAAGCTCTTCGGCCTTGATCCCCCGAGTTCTTTCGGTCTCTGTCGTTCCGAAGTTGAGAAAATGAGTTTTGGAGTCGTAAGGCGACGGATTGCGTCTGGAGGCTCTAATCTGTTTTCTGCGCAGTATTTGCGGGGAATTCGACCTTCCATTTCTGCAGGAAGAGTTCGTTCTGTTGCTGAGAAAGAGATTTTGCACCAGTGTAGAAGTTTTGGACATGTCAGAAATTTTTCTCACCTACTTTCACCTGGTGGCCTTGCTAGTCCTCAATCTCTAAGGGTAGCATTTGCAAGTATGCAGCAAAGACCTATGATGCAATTGAATGGTCGGAACTTCTCTTCAGATAATGGGGACCTGCTTGATGTTGTCGTCCCTCCACTGGCTGAGTCTATTACTGATGGAACGCTGGCAAAATTCCTGAAGAATCCGGGTGATAGAGTAGAATTGGATGAAGCAATTGCTCAAATTGAGACAGATAAGGTTACAATTGATGTCACTAGTCCAGGAGCTGGTGTTATTCAGAAGTTTGTTGCCAAGGAAGGGGATACGGTGGAACCAGGTACCAAGGTCGCTATTATTTCAAAATCTGGTGAAGGTGTAACTCATGTTGCTCCTTCTGAGAAGACATCAGAGCAAGCTGCACCTCAAGCTGCTCCAGCTGAAAAAACAGAAAAGCCTAAAGCTGAAACTACGGTCAGTGAGAAGCCTAAAGCACCATCTCCACCACCTCCTCCTAAACGTTCAGCTACAGAACCCCAGCTTCCACCAAAGGACAGGGAAAGACGAGTTCCAATGACAAGGCTTCGAAAGAGGGTTGCTACACGATTGAAAGATTCTCAGAACACATTTGCTATGTTGACAACGTTCAATGAAGTTGACATGACAAATTTGATGAAGCTTCGTTCTGATTACAAGGATGCTTTTGTTGAAAAGCACGGAGTCAAGTTGGGTCTTATGTCTGGATTTATCAAAGCTGCTGTCAGTGGGCTTCAGAATCAACCTATTATTAATGCTGTGATTGATGGGGATGATATTATATACAGAGACTATATAGACATTAGCATAGCCGTTGGCACTCCTAAGGGTCTTGTTGTGCCAGTCATTCGAAATGCAGATAAGATGAACTTTGCTGAGATAGAGAAGGAGATAAACACCCTTGCAAAGAAGGCAAATGATGGTACCATATCAATTGACGAGATGGCTGGAGGTTCCTTCACCGTATCCAATGGCGGTGTTTATGGAAGCCTTCTGAGTACCCCCATTATTAATCCTCCTCAGTCTGCAATCTTGGGAATGCACTCGATCGTCTCCCGTCCTGTGGTGGTTGGAGGCAACGTTGTCCCAAGGCCAATGATGTACATTGCTCTAACATATGACCATAGACTCATTGATGGGAGAGAGGCCGTGTTCTTTTTGCGCCGCATCAAGGATGTCGTGGAAGACCCACGGAGACTCCTCCTTGACATATAA 1548 45.48 MTITRGNIPFPSPSPFPFSSSSRCLSLKLFGLDPPSSFGLCRSEVEKMSFGVVRRRIASGGSNLFSAQYLRGIRPSISAGRVRSVAEKEILHQCRSFGHVRNFSHLLSPGGLASPQSLRVAFASMQQRPMMQLNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTIDVTSPGAGVIQKFVAKEGDTVEPGTKVAIISKSGEGVTHVAPSEKTSEQAAPQAAPAEKTEKPKAETTVSEKPKAPSPPPPPKRSATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADKMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTVSNGGVYGSLLSTPIINPPQSAILGMHSIVSRPVVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11110629 11119297 + CaPI482276_09g010750.1 Cam09g1075 135404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1075 515 CDD lipoyl_domain 147 219 - -
Cam09g1075 515 Gene3D - 146 222 - -
Cam09g1075 515 MobiDBLite consensus disorder prediction 278 293 - -
Cam09g1075 515 MobiDBLite consensus disorder prediction 262 277 - -
Cam09g1075 515 ProSiteProfiles Biotinyl/lipoyl domain profile. 145 220 IPR000089 -
Cam09g1075 515 Gene3D - 271 511 IPR023213 -
Cam09g1075 515 SUPERFAMILY CoA-dependent acyltransferases 285 514 - -
Cam09g1075 515 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 170 199 IPR003016 -
Cam09g1075 515 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 109 514 IPR050537 GO:0004149(PANTHER)|GO:0005739(PANTHER)|GO:0006099(PANTHER)
Cam09g1075 515 MobiDBLite consensus disorder prediction 221 293 - -
Cam09g1075 515 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 278 513 - -
Cam09g1075 515 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 285 513 IPR001078 GO:0016746(InterPro)
Cam09g1075 515 SUPERFAMILY Single hybrid motif 146 237 IPR011053 -
Cam09g1075 515 Pfam Biotin-requiring enzyme 148 219 IPR000089 -
Cam09g1075 515 NCBIfam dihydrolipoyllysine-residue succinyltransferase 258 514 IPR006255 GO:0004149(InterPro)|GO:0006099(InterPro)|GO:0045252(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1075 K00658 - - csv:101204042 822.387
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49