Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1076 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCTCCAACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTTGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGGAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTCGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGACTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTAGTTGATAATGATTTTAGTGTTGTGAAGAGTAGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAATCGAACGCCGCTACGCCGGAGCTTTCTTCTTGGAGCAATTGCCCAATTCAAAGCTCCAAATCTCCGTCCACACTTCGCGGCTAGAGTTCGGGCCGGCAGTGTAGTTTCAGCGATTGTAATGGAAGCGCCGCCGTTCTCCATCGCTGTTTCTTCTTCTTCTTCTTCTTCTTCTCAGTCTGTATTTCGATCACTTTCGTCGTTGTCTTATACCAGCTCCCTCATTTGTCTTCGCAACAATCGTTACAAAGGTCGTCATCTCAAAGTCAAGTGCTCCGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTACTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATCTGTCTTGGGCTTCAACTACTCTTTGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGTTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGATTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGATGTAGGTCTGTCTGTCCTACGAAGATTCCTGTTTCCAAAGTTGTCTGTGACCAAGAAGCCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTCTGAATATAACCGGTTTCCGTGACTTCCCTCTTGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATCGGAAGTGATGCAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCCTAAAGACCGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAATGTACAGTAAATGGAGGTCGAGAAGGTCGACCTATTGGCGCTTTTGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATTTGGTAAAGCTGATATCAGATTCTGTGAGCATACCCGTTATTGCCAGCAGTGGTGCTGGCTCTCCTCACCATTTCTCTGAGGTCTTTAACAAAACGAATGCATCTGCTGCCCTTGCCGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTAAAGGAAGGCATAGAAACAATGATGGAAATGAATATTGTGATGACTGATGTGAAGTAA 3174 45.84 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSSNLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDLPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHGNGSVSSDIFASVEEEEILNLEFEENSVLFCLVDNDFSVVKSRNGGLEMEFESDFMLETVRSEVENRTPLRRSFLLGAIAQFKAPNLRPHFAARVRAGSVVSAIVMEAPPFSIAVSSSSSSSSQSVFRSLSSLSYTSSLICLRNNRYKGRHLKVKCSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKLSVTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGLKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIETMMEMNIVMTDVK 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11121031 11141916 - CaPI482276_09g010760.1 Cam09g1076 135405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1076 1057 CDD GATase1_IGP_Synthase 519 717 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cam09g1076 1057 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1076 1057 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1076 1057 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cam09g1076 1057 NCBIfam imidazole glycerol phosphate synthase subunit HisH 519 717 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cam09g1076 1057 Gene3D - 516 738 IPR029062 -
Cam09g1076 1057 FunFam Imidazole glycerol phosphate synthase hisHF 514 739 - -
Cam09g1076 1057 FunFam Imidazole glycerol phosphate synthase hisHF 737 1048 - -
Cam09g1076 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam09g1076 1057 SUPERFAMILY Class I glutamine amidotransferase-like 518 718 IPR029062 -
Cam09g1076 1057 Gene3D Aldolase class I 739 1049 IPR013785 -
Cam09g1076 1057 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam09g1076 1057 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 518 719 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cam09g1076 1057 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Cam09g1076 1057 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Cam09g1076 1057 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 735 1047 IPR050064 GO:0000107(PANTHER)
Cam09g1076 1057 NCBIfam imidazole glycerol phosphate synthase subunit HisF 735 1044 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cam09g1076 1057 SUPERFAMILY Ribulose-phoshate binding barrel 734 1046 IPR011060 -
Cam09g1076 1057 CDD STKc_MAPKKK 2 258 - -
Cam09g1076 1057 Pfam Histidine biosynthesis protein 738 1029 IPR006062 GO:0000105(InterPro)
Cam09g1076 1057 Pfam Glutamine amidotransferase class-I 521 716 IPR017926 -
Cam09g1076 1057 CDD HisF 737 1041 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cam09g1076 1057 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 518 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1733 Cam-Chr1:30926986 Cam09g1076 Cam-Chr9:11121031 4.40E-63 dispersed
Cam01g2235 Cam-Chr1:34826418 Cam09g1076 Cam-Chr9:11121031 2.70E-83 dispersed
Cam02g0934 Cam-Chr2:13357114 Cam09g1076 Cam-Chr9:11121031 3.70E-83 dispersed
Cam03g0061 Cam-Chr3:1552085 Cam09g1076 Cam-Chr9:11121031 2.50E-53 dispersed
Cam09g1076 Cam-Chr9:11121031 Cam10g0432 Cam-Chr10:6692502 3.00E-11 dispersed
Cam09g1076 Cam-Chr9:11121031 Cam02g0216 Cam-Chr2:3088457 1.20E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85440 PF00977 His_biosynth 2.50E-44 CL0036 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1076 K01663 - csv:101205184 1090.49