Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1142 ATGGGTGGCAGTGAGATGAATAAATCCACGAAGGAGGAATCCAAGACAACACCTGCCACTACACAGGAACAGTCTCCAAACACAAGCACTGGCACCGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGGCAACAAGCCCCCAGGCACACACATATATGTGGGGGGTACAGCCTATTATGCCCCCTTATGGAACCCCTCCACACCCGTATGTTGCAATGTATCCTCATGGTGGCATATATGCTCATCCGCCTATGCCTCCGGGATCATATCCTTACAGTCCTTTTGCCATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACTCCAGGCAACATGGAAGGGGAAGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAGCATGATAACTGGGAAGAACAATGAGCTTGGTAAACCATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGCACAAGTGAAAGAAGTGGTGCTGACTCTGAAAATGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTGGAGGGACCCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTTGCGCATCCATTGGTGAACCAAACAATGTCCATGATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACCCCAACGACTTCTGCCATCCCTTCATTGTGTGGGAAGGTCCCTTCGGCTCCGGTTCCAGGAGCTGTTGCTGCTGGGTCACGGGACGGCATTCCGTCCCAACCTTGGTTACAGGATGAAAGAGAGCTGAAAAGACAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGCGATGAGCTGTCTCAGCGTGCGGAAGCTTTGAAGGAAGAAAATGCGAGTCTTAGATCTGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGCCAAAGACGGCCAAAATTTGAATAAAGGTCACCATACATCCCGGACCCAACTTGCTAAAGGAACTGACCCGTGTCGTCTCGGGACTGTTGATTCTTACGGAGGCTTCATCTTTAACCCGAAGCTCTGTGTAATTTCGGGTGTAATCAGCGACGTTTCCGTCGTGATTCCGTCGGCCGGCGGTCTTCGGTCACCGGAACTGAGACACTGCCATGCATCTATCGATTCTAAGAGTTCCATTTCCGCTGGATTCTTTAGAGGTTGTTCATCATTTTGCATCCCAAAGTCTGGATCTAGTTTGGATAAATTTCGATTGAGGGGCTTAAGAATAAGAGCTTCAGATGATTCTCAGAATGTTTATCCAGTTGCACCTGTTCAATTTGAATCCCCAGTTGGCCAGCTATTGGCCCAGATTTTGCAATCCCACCCTCATTTGTTTCCTGCAACTGTGGATCAGCAACTTGATAACCTTCAAACACAGAGAGATTCGCAGACAGAAGAGACTCCTTCCTCATCTCAAGATCCTCTCTACAAGAGGATAGCTGAAGTGAAAGAGAAAGAAAGGCGAAAGACGTTGGAAGAGATATTATATTGCTTGATCGTTGGAAAGTTTGTGGAGAATGACATTTCAATGATCCCCAAGATAACAGAAACCTCTGATCCTACTGGCCGAGTTGATTTTTGGCCAAACCAAGAGCAGAAACTGGAATCTGTCCACTCTCCTGAGGCATTTGAAATGATTCAAAGTCACTTGTCTCTTGTCCTTGGAGACCGATTTGTCGGTCCCCTTACTTCCATTGTTGAAATGAGCAAAATAAAACTTGGGAAGCTATATGCGGCTTCTATAATGTATGGATACTTTCTCAAAAGAGTTGATCAACGTTTCCAACTCGAAAGGACCATGAAAACTCTTCCTGAAGCATTTACAAAAGACTTTGATGAACCGATACCAGCAAATCAACTCTGGGATCCCGATTCCTTGATCATGATTCCACCTGATGATGAAGGGGTTGGCGACAGCAGGGGATTTATCAATGCTGATGAAAGCAAATCATATAGATTGCGATCCTATGTGATGTATTTGGATTCCGAGACACTTCAAAGATATGCAACATTGAGATCCAAAGAAGCTATATCTTTGATCGAAAAGCAGACTCAAGCATTGTTTGGAAAACCAGACATTAGGATAGCTGATGATGGTTCGATCGACACATTCAACGATGAAGTGATTTCTATTACATTCTCTGGGCTGACAATGCTAGTACTGGAGGCTGTTGCGTTCGGATCATTCCTATGGGATGCAGAAAGCTATGTCGAATCAAAATACAACTTCATCAAAAGCTGA 2487 44.47 MGGSEMNKSTKEESKTTPATTQEQSPNTSTGTVNPEWSGFQAYSPIPPPGYLATSPQAHTYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPMPPGSYPYSPFAIASPNGIAEASGNTPGNMEGEGKPSELKEKLPIKRSKGSLGSLSMITGKNNELGKPSGTSANGVYSKSAESESEGTSERSGADSENDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSMIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPSLCGKVPSAPVPGAVAAGSRDGIPSQPWLQDERELKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKAKDGQNLNKGHHTSRTQLAKGTDPCRLGTVDSYGGFIFNPKLCVISGVISDVSVVIPSAGGLRSPELRHCHASIDSKSSISAGFFRGCSSFCIPKSGSSLDKFRLRGLRIRASDDSQNVYPVAPVQFESPVGQLLAQILQSHPHLFPATVDQQLDNLQTQRDSQTEETPSSSQDPLYKRIAEVKEKERRKTLEEILYCLIVGKFVENDISMIPKITETSDPTGRVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGDRFVGPLTSIVEMSKIKLGKLYAASIMYGYFLKRVDQRFQLERTMKTLPEAFTKDFDEPIPANQLWDPDSLIMIPPDDEGVGDSRGFINADESKSYRLRSYVMYLDSETLQRYATLRSKEAISLIEKQTQALFGKPDIRIADDGSIDTFNDEVISITFSGLTMLVLEAVAFGSFLWDAESYVESKYNFIKS 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11933658 11956179 + CaPI482276_09g011420.1 Cam09g1142 135471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1142 828 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 PANTHER EXPRESSED PROTEIN 450 827 IPR038925 -
Cam09g1142 828 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 MobiDBLite consensus disorder prediction 113 223 - -
Cam09g1142 828 MobiDBLite consensus disorder prediction 1 39 - -
Cam09g1142 828 Pfam Protein of unknown function (DUF760) 557 682 IPR008479 -
Cam09g1142 828 MobiDBLite consensus disorder prediction 281 322 - -
Cam09g1142 828 MobiDBLite consensus disorder prediction 1 46 - -
Cam09g1142 828 MobiDBLite consensus disorder prediction 145 176 - -
Cam09g1142 828 Pfam Disordered region downstream of MFMR 134 267 - -
Cam09g1142 828 Gene3D - 302 357 - -
Cam09g1142 828 MobiDBLite consensus disorder prediction 365 390 - -
Cam09g1142 828 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 MobiDBLite consensus disorder prediction 362 403 - -
Cam09g1142 828 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Cam09g1142 828 SMART brlzneu 299 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam09g1142 828 Coils Coil 312 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1069 Cam-Chr4:24836867 Cam09g1142 Cam-Chr9:11933658 9.50E-92 transposed
Cam04g1317 Cam-Chr4:27002926 Cam09g1142 Cam-Chr9:11933658 2.20E-90 transposed
Cam05g0130 Cam-Chr5:1553149 Cam09g1142 Cam-Chr9:11933658 4.10E-28 transposed
Cam09g0849 Cam-Chr9:8792897 Cam09g1142 Cam-Chr9:11933658 1.00E-41 transposed
Cam10g0124 Cam-Chr10:2812691 Cam09g1142 Cam-Chr9:11933658 1.40E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52595 PF16596 MFMR_assoc 2.00E-44 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1142 - - - 0.0