Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam09g1148 ATGGAGCTATTTCCAGCACAACCAGATTTATCACTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCATCTTGGAGAAGAACAAGTAGTTCTTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTTAGTTTGGAGTCTTCTTCTAAATCCACTCCCAAACATCATCATCCGCATCATCATCATCTTCATCATCTTCATCCTCACTCTTGTTTTGATCTCTCTCTCTCAAATTTAACCCAAATTAACCATCATCAATACCCAAACATATCTCCTCCTCCTAGTACTCCTAATCATCTTCTTCTTCATCATCATCATCATCATCATCGTTATCCCGCTCTCGATACCACCGCACACCTTTTCGAAACCCTAAACAAAACCCACCACCGACCCGCCATTTTCCACCAGACGCCATCACTTGACCCGCCACCACCTCCCTCGCTCCCGTTTCCGGGCCAAACCAATGGGCAAGACTTGGGATTTTTGCGACCCATTAGAGGAATTCCAGTGTACCATCAGACGAATAACCCCTCCGGCACCGGAAACGGCGGTGTTGTCACTCCCTCCTCTGCTGGTCACGGCCAGATTATGATGCGATCGAGATTCTTGTCGAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCTCGGATGAGATGGACTTCCACTCTTCATGCTCGCTTTGTTCATGCTGTTGAACTTCTTGGTGGCCATGAAAGAGCTACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACTTTAGCTCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAACCAGCCATGGGAAGACAAAATGACAACTCAATTCAACAAACAACAAGGCAAAACCCTCACCAAGATAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTACCAAATGATTCTTCTAGGGACCTTTCTTCATCCCTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAGAGACTATCAGAAATAAGCTCATCAACAGATCTTTGTGGTGTGACAAATAATCCTCATCAAAAGCCTAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1215 43.79 MELFPAQPDLSLQISPPNTNKPSSSWRRTSSSSQEEVDLGFWNNLSLESSSKSTPKHHHPHHHHLHHLHPHSCFDLSLSNLTQINHHQYPNISPPPSTPNHLLLHHHHHHHRYPALDTTAHLFETLNKTHHRPAIFHQTPSLDPPPPPSLPFPGQTNGQDLGFLRPIRGIPVYHQTNNPSGTGNGGVVTPSSAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNDNSIQQTTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDLCGVTNNPHQKPNLEFTLGRPI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12092861 12097549 - CaPI482276_09g011480.1 Cam09g1148 135477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam09g1148 404 Gene3D - 216 273 - -
Cam09g1148 404 MobiDBLite consensus disorder prediction 11 32 - -
Cam09g1148 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 270 IPR006447 GO:0003677(InterPro)
Cam09g1148 404 MobiDBLite consensus disorder prediction 49 68 - -
Cam09g1148 404 MobiDBLite consensus disorder prediction 1 32 - -
Cam09g1148 404 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Cam09g1148 404 MobiDBLite consensus disorder prediction 352 371 - -
Cam09g1148 404 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Cam09g1148 404 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 403 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cam09g1148 404 FunFam Myb family transcription factor 215 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam09g1148 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2142 Cam-Chr5:29858106 Cam09g1148 Cam-Chr9:12092861 3.60E-30 dispersed
Cam08g2020 Cam-Chr8:25892384 Cam09g1148 Cam-Chr9:12092861 1.70E-32 dispersed
Cam09g1148 Cam-Chr9:12092861 Cam11g0066 Cam-Chr11:2247113 5.30E-17 dispersed
Cam01g0881 Cam-Chr1:10316343 Cam09g1148 Cam-Chr9:12092861 2.40E-33 transposed
Cam04g0693 Cam-Chr4:21211930 Cam09g1148 Cam-Chr9:12092861 3.90E-20 transposed
Cam05g1220 Cam-Chr5:11550842 Cam09g1148 Cam-Chr9:12092861 1.20E-44 transposed
Cam10g0130 Cam-Chr10:2908328 Cam09g1148 Cam-Chr9:12092861 1.10E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam05g1220 . 252 452 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Cam09g1148 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cam05g2142 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cam08g2020 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cam05g2500 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 2.4e-53 206.1
Cam08g0944 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Cam03g0128 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.4e-60 229.6
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Cam05g0378 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.3e-65 246.1
Cam05g0378 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 9.6e-80 293.9
Cam09g2321 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.1e-42 168.3
Cam02g1942 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cam07g0221 . 4 151 G2-like Transcription Factor Family AT3G24120 54.9 2.2e-39 159.8
Cam01g2160 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cam11g0985 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 8.9e-50 194.5
Cam09g2321 . 1 391 G2-like Transcription Factor Family AT1G79430 53.4 1.0e-83 307.4
Cam02g1942 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cam05g0378 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cam01g2159 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Cam04g0579 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cam10g1619 . 1 283 G2-like Transcription Factor Family AT3G10760 58.1 8.0e-83 304.3
Cam04g0579 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52597 None None None None Cam TF